1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaacttaaatcacaatgactttcattgttttaagtctttattttgatatcttgtactaatataacttctttctcttaaattgtaacag
species | Arabidopsis thaliana |
transcript | AT3G27090.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG GTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTCEST: gi|125068830|gb|EL134820.1|EL134820
genomic: ACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaactta ... attgtaacagGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTC
EST: AGTCAAGGTTTCCGGCTCAG GTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTCEST: gi|125166573|gb|EL192306.1|EL192306
genomic: AGTCAAGGTTTCCGGCTCAGgtgaaactta ... attgtaacagGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTC
EST: GGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGTCTCAG GTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTTEST: gi|125320478|gb|EL334563.1|EL334563
genomic: GGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGG-CTCAGgtgaaactta ... attgtaacagGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTT
EST: TGCAAAGGAGAGTCAAGGTTTCCGGCTCAG GTTAAGGTATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCTEST: gi|124732253|gb|EH823655.1|EH823655
genomic: TGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaactta ... attgtaacagG-TAAGG-ATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGGACTCCT
EST: CTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG GTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGEST: gi|125018961|gb|EL091230.1|EL091230
genomic: CTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaactta ... attgtaacagGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAG
EST: CTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAG GTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGG
genomic: CTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaactta ... attgtaacagGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACAACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAGTCAAGGTTTCCGGCTCAGgtgaaacttaaatcacaatgactttcattgttttaagtctttattttgatatcttgtactaatataacttctttctcttaaattgtaacag
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA