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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATATATTTAGTTGGAGAATCTATTGGAGCATGTCTTGCTTTAGATGTTGCAGCCAGAAATCCCAACATCGATCTTTCTCTGATCTTGGTTAATCCAGgtacagaagttcgccttattttgtcggtgaatgtcacgaatgtttctcatcatagacattgttttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G26840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCAATATATTTAGTTGGAGAATCTATTGGAGCATGTCTTGCTTTAGATGTTGCAGCCAGAAATCCCAACATCGATCTTTCTCTGATCTTGGTTAATCCAGgtacagaagttcgcctt-----attttgtcggtgaatgtcacgaatgtttctcatcatagacattgttttgttgcag-------------------------
|| |||||  | |||||||||||| |||||| ||| |||||| ||| |||||||||| | || ||  | || |||||| | || || |||| ||| ||||||  |||| |||   ||     ||| ||| | |||  |     | | |  ||     ||  || || | |      |                         
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtg-agaacttcctttttgtaaattatgttgatgagagcttatactttcacttgatttattcactgctataa-atggtccttttcaattccagcaaaaattc