1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgttttgcataaacctaatgcagcatgttttaatacctttgatgggctaatttaatgttcaatatagaaatgcatatcatccaataggcttaaggaacttgatgatcccatttacttcctcttgatactatttactgtgtcttctattttaag
species | Arabidopsis thaliana |
transcript | AT3G25800.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG GACGGAGCTGGTGCCTGCATATGTGCGCCTAEST: gi|86040357|gb|DR336112.1|DR336112
genomic: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgt ... ctattttaagGACGGAGCTGGTGCCTGCATATGTGCGCCTA
EST: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG GACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGAEST: gi|86040358|gb|DR336113.1|DR336113
genomic: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgt ... ctattttaagGACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGA
EST: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG GACGGAGCTGGTGCCTGCATATGTGCGCSTACTTCGTGATAATGAAGCTGAEST: gi|86040356|gb|DR336111.1|DR336111
genomic: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgt ... ctattttaagGACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGA
EST: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAG GACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGA
genomic: GCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgt ... ctattttaagGACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGgtaagaacgttttgcataaacctaatgcagcatgttttaatacctttgatgggctaatttaatgttcaatatagaaatgcatatcatccaataggcttaaggaacttgatgatcccatttacttcctcttgatactatttactgtgtcttctattttaag
- - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC