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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAGgttagtaaatcatattccatgaaaaatacatgtaactaatatgtaaaaggtatatattaatttcatcattttagttacaaatgtttttataatttagaaggaaaataatatttattgtttcatattttttttaatgataaatag

Basic information

species Arabidopsis thaliana
transcript AT3G25790.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25790.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
TAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAGgttagtaaatcatattccatgaaaaatacatgtaactaatatgtaaaaggtatatattaatttcatcattttagttacaaatgtttttata-atttagaaggaaaataatatttattgtttcatattttttttaatgataaatag
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TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgtataaaactttcctcgaagta-gcaaaaactttatctttgt------tatgtcattttc---attttggtaattcatcttagtatggatcctgatggatgctagg-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085534|gb|DR381293.1|DR381293
EST:     TAATGAAGGTTGATGGGTTAMCAAATGATGAAGTCAAAAGTCATTTACAG                         AAATATAGGCTGCATGCAAGACGGCCAAGCCAAACAACACCGAACAACAGA
genomic: TAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAGgttagtaaat ... tgataaatagAAATATAGGCTGCATGCAAGACGGCCAAGCCAAACAACACCGAACAACAGA