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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGCATGTCTCCGAAGTATCATGGGATTACGTTCAAGATGTTAGGGATGTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAgtgagttgcttattttggttactgaaatttattagccatgactcatgatatagtttttaatcaaaagttgttccaatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G23700.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466810|gb|EG509402.1|EG509402
EST:     CGGG-TATAGTCACGAATATTGACAA                         AGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCT
genomic: CGGGTTATAGTCACGAATATTGACAAgtgagttgct ... tccaatgcagAGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCT
EST: gi|125247411|gb|EL261496.1|EL261496
EST:     GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAA                         AGAGAAATCAAGGATTACACTATCCATCAAACAA
genomic: GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAgtgagttgct ... tccaatgcagAGAGAAATCAAGGATTACACTATCCATCAAACAA
EST: gi|125270491|gb|EL284576.1|EL284576
EST:     GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAA                         AGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGA
genomic: GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAgtgagttgct ... tccaatgcagAGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGA
EST: gi|124861690|gb|EH946127.1|EH946127
EST:     GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAA                         AGAGAAATCAAGG
genomic: GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAgtgagttgct ... tccaatgcagAGAGAAATCAAGG
EST: gi|125251487|gb|EL265572.1|EL265572
EST:     GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAA                         AGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCT
genomic: GTACTACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAgtgagttgct ... tccaatgcagAGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCT