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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgtacataatatatacttgtagaagcataggtacttacttcttcgattgttcgagttatttctaatggtttttatctacag

Basic information

species Arabidopsis thaliana
transcript AT3G23480.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23480.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 15
GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgtacataatatatacttgtagaagcataggtacttacttcttcgattgttcgagtt---atttctaatggt-ttttatctacag
|| |||||||  ||||||||||| ||||||||||| ||||||||||| || ||||| || || ||||||||   ||| || |||||||| ||| |||||   | | |  |  || |       ||  | ||   |||| |    |      |   || |   ||||| ||||  || |||
GTGATGACACAGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTATTTTGgtaagcattct-catctg-aatctttcagtgagttgtctctttgggactctacacttcaatataccatggtatttttactgcag

upper sequence: AT3G23480.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
----GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgta-cataatatatacttgtagaagcataggtacttacttcttcgattgttcgagttatttctaatggtttttatctacag
     ||   ||||  || |||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||  ||| |||   |||||  | |||||| || |||  | |    |  |   ||| | | ||    |||| |  | | |||   |  || |   || |  ||| |||
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatt-tcacttccagagattgagcc-tgcctga--attctattctgcag

upper sequence: AT3G23480.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgta-cataatatatacttgtagaagcataggtacttacttcttcgattgttcgagttatttctaatggtttttatctacag
 ||   ||||  || |||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||  ||| |||   | |||  | |||||| || |||  |      |  |   ||| | | || |   | |     |||   ||   |  | |   ||||        
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcacttccagagattcagcttgcctgaattcaattttgcag----