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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G23470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 15
GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag
|| |||||||| ||||||||||| || |||||||| ||||||| ||| || ||||| || || ||||||||   ||| || |||||| | ||| |||||    ||     ||  |  | |   |   | |   |||      || |   ||| |  ||         ||    |||||
GTGATGACACAGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTATTTTGgtaagcattctcatctgaatctttcagtgagttgtctctttgggactctacacttcaatataccatggtatttttactgcag

upper sequence: AT3G23470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
----GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag
     ||   ||||| || |||||||| || |||||||| ||||||| ||||||||||||| | || |||||||||  ||| |||   ||| |  | |||||| |    |   ||   | ||   ||| |||    | || |  |||| |  | | |||        |||  || | |||||
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgta-acacaattgacatgattt---catttataagcaatttca-cttccagagattgagcctgcctgaattctattctgcag

upper sequence: AT3G23470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag
 ||   ||||| || |||||||| || |||||||| ||||||| ||||||||||||| | || |||||||||  ||| |||   | | |  | |||||| |    |   ||   | ||   ||| |||    | || |   | |     |||   ||   |  |||   | |||||||
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgta-acacaattgacgtgattt---catttataagcaatttcacttccagagattcagcttgcctg-aattcaattttgcag