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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatataccagtcctacattgttaaaattcttcatagtttgtttataaaacaaacctctaaatgtttttcgattattctag

Basic information

species Arabidopsis thaliana
transcript AT3G22890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G38760.1 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgta-atataccagtcctac-attgttaaaattcttcatagtttg-tttataaaacaaacctctaaatgtt---tttcgattattctag------------
|||||||||||||||||||| || || || ||||| ||||| || || || |||||||| || ||| ||||||| || ||||| |||||| || ||   || ||   | |   |||  |     ||||||| |||   |||      | ||  | ||   |||  |||| |  |             
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtatatttatttgttctctgaataacaaaccttggtgtagtttggtttgagaaaatgttgtttatgttttcacttttaattactaaaacgtcaccttatt

upper sequence: AT3G22890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgta------------atataccagtcct---acattgttaaaattcttcatagtttgtttata-aaacaaacctctaaatgtttttcgattattctag--
|||||||||||||||||||| || || || ||||| ||||| || || || |||||||| || ||| ||||||| || ||||| |||||               ||| ||  |||   |  |||  |||||  ||  || |||  || ||      ||| ||||| |  |      | |   ||   
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattt

upper sequence: AT3G22890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G28980.2 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgta------------atataccagtcct---acattgttaaaattcttcatagtttgtttataaaaca-aacctctaaatgtttttcgattattctag----
|||||||||||||||||||| || || || ||||| ||||| || || || |||||||| || ||| ||||||| || ||||| |||||               ||| ||  |||   |  |||  |||||  ||  || |||  || ||      ||| ||||| |  |      | |   ||     
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGGTgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125035015|gb|EL107284.1|EL107284
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGA
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGA
EST: gi|86077424|gb|DR373181.1|DR373181
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125302843|gb|EL316928.1|EL316928
EST:     TTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125134005|gb|EL175164.1|EL175164
EST:     CTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: CTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|116444819|gb|EG487411.1|EG487411
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125239841|gb|EL253926.1|EL253926
EST:     ATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: ATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|116460581|gb|EG503173.1|EG503173
EST:     TTTTCGATCCCTCGAGGCCTCAAGATTTTTTGTTCATTTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|124772906|gb|EH863035.1|EH863035
EST:     ATCTCCGGCACTAAG                         ATGCGCTTACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGT
genomic: ATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGC--ACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGT
EST: gi|124780621|gb|EH870564.1|EH870564
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATAGCGCACATTGGCAAAGAACAACGAAAACCCGCC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagAT-GCGCACATTGGCAAAGAACAACGAAAACCCGCC
EST: gi|116460580|gb|EG503172.1|EG503172
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125203910|gb|EL218864.1|EL218864
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGG
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGG
EST: gi|125309566|gb|EL323651.1|EL323651
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAG
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAG
EST: gi|124791335|gb|EH881014.1|EH881014
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTA
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTA
EST: gi|86082234|gb|DR377993.1|DR377993
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125185276|gb|EL200230.1|EL200230
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTA
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTA
EST: gi|125215760|gb|EL229844.1|EL229844
EST:     CTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTACCGGCACTAAG                         ATGCGCACATTGGC
genomic: CTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCT-CCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGC
EST: gi|116453694|gb|EG496286.1|EG496286
EST:     TTTTCGATCCCTCGAGGCCTCAAGATTTTTTGTTCATTTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|124860233|gb|EH944670.1|EH944670
EST:     GCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAA
genomic: GCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAA
EST: gi|116457320|gb|EG499912.1|EG499912
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|116444818|gb|EG487410.1|EG487410
EST:     TTTTCGATCCCTCGAGGCCTCAAGATTTTTTGTTCATTTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCCCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125024539|gb|EL096808.1|EL096808
EST:     TCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACTACGAAAACCCGCCAGACGGTTT
genomic: TCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTT
EST: gi|116478451|gb|EG521043.1|EG521043
EST:     TTTTCGATCCCTCGAGGCCTCAAGATTTTTTGTTCATTTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|116420530|gb|EG463122.1|EG463122
EST:     TTTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGC
EST: gi|125034532|gb|EL106801.1|EL106801
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACA
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACA
EST: gi|125041509|gb|EL113778.1|EL113778
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTT
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTT
EST: gi|124855245|gb|EH939682.1|EH939682
EST:     TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG                         ATGCGCACATTGGC
genomic: TCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgtaatatacc ... attattctagATGCGCACATTGGC