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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAAAAGGGACTATCGAAGAGCTCTATTCAGAACATCCCGATGTTCTACAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGgtgataaaaatgtaattaattagaatcatctaggaatcagattttaatatatgataataatgacttaaatcatatatatttctaatgttcatttttggggtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT3G20395.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116381752|gb|EG424344.1|EG424344
EST:     ACAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAG                         GATTGGGAAGAAGGGGAAGTAGGAAGAAAGC
genomic: ACAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGgtgataaaaa ... gggtgtgtagGATTGGGAAGAAGGGGAAGTAGGAAGAAAGC
EST: gi|116403630|gb|EG446222.1|EG446222
EST:     ACAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAG                         GATTGGGAAGAAGGGGAAGTAGGAAGAAAGCTAGCAAGATGTGGCCACACA
genomic: ACAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGgtgataaaaa ... gggtgtgtagGATTGGGAAGAAGGGGAAGTAGGAAGAAAGCTAGCAAGATGTGGCCACACA