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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATGgtatggtgaataaatcttgaatccgtgttcttttagtcttccatcttttgcttaagggctgtcttcatcttaatatgcccactgtataaataatacctgttaatgtattgttcttctttctgcaacatttatggctgactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G20290.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125219518|gb|EL233603.1|EL233603
EST:     TGAAGTTCTTATTAGCGATG                         TTGATTTCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAA
genomic: TGAAGTTCTTATTAGCGATGgtatggtgaa ... ctgactgcagTTGATTTCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAA
EST: gi|164231956|gb|ES127608.1|ES127608
EST:     GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG                         TTGATTTCAAAAATA
genomic: GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATGgtatggtgaa ... ctgactgcagTTGATTTCAAAAATA
EST: gi|116430168|gb|EG472760.1|EG472760
EST:     GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG                         TTGATTTCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAA
genomic: GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATGgtatggtgaa ... ctgactgcagTTGATTTCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAA
EST: gi|125263744|gb|EL277829.1|EL277829
EST:     GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG                         TTGATTTCAAAAATA
genomic: GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATGgtatggtgaa ... ctgactgcagTTGATTTCAAAAATA
EST: gi|125121799|gb|EL168783.1|EL168783
EST:     GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG                         TTGATTTCAAAAATATCAAATCCTCCTACCATGGAAGGTCTGGGTGTATT
genomic: GTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATGgtatggtgaa ... ctgactgcagTTGATTTCAAAAATATCAA-TCCTCCTACCATGGAAGGTCTGGGTGTATT