Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaagagaatcctttgctgtatacttgatcacagaagcctaatgatatgatagttcaattgattttagtgtacttgtttggactttagataattatgatc...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G19900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G19900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G134067_T01 (Zea mays), 5'ss of exon 3
GAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaagagaatcctttgctgtatacttgatcacaga---agcctaatgatatgatagttcaattgattttagtgtacttgtttggactttagataattatgatc
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GAGTTCATGGGGAGGAATCTGCTGGCCATGAATGTGATGTGGAAGTACAGGGAGCAAgtgag----ttattagcctttcatttgtccatagatccatctcagtgcgtcgctagctca-tgcatgatgatgaact-gtag---------------------
upper sequence: AT3G19900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G03280.1 (Glycine max), 5'ss of exon 4
GAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaa-gagaatcctttgctgtatacttgatcacagaagcctaatg-atatgatagttcaattgattttagtgtacttgtttggactttagataattatgatc
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GAGTTCATGGGAAGAAATCTCCTTGCGATGAATGTCATGTGGAAGTACATGGAGCAGgtattaaaaattctgtgctacatcttgtattgcttt-gtataatataaatgataaatgatttgattagattcctttcaaatgaaatgtacaatttgttgga-
upper sequence: AT3G19900.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G11080.2 (Glycine max), 5'ss of exon 4
GAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaa-gagaatcctttgctgtata----cttgatcacagaagcctaatgatatgatagttcaattgattttagtgtacttgtttggactttagataattatgatc
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GAATTCATGGGAAGAAATCTCCTTGCGATGAATGTCATGTGGAAGTACATGGAGCAGgtattaaaaattcagtgctacttcgtgttttctttgtctaagataaatgatttgag---tagattcctttcaattgaaacatacaatttattggacactaaga--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86077447|gb|DR373204.1|DR373204EST: TGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGWACAG AGGTCTTTTCCTCTAACCGAAGARGAATATATACTTAGACTTGACGATGTA
genomic: TGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaagagaat ... caacgcctagAGGTCTTTTCCTCTAACCGAAGAAGAATATATACTTAGACTTGACGATGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGgtaagagaatcctttgctgtatacttgatcacagaagcctaatgatatgatagttcaattgattttagtgtacttgtttggactttagataattatgatc
- - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctttgc