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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTTATTGGGCGATTCTCCTTTTTTCACGTCTGTGCCTTCTGGAAGAGTTGGCTATGGACAGGATTCAGTGTATAAGTCTAATGACGAGTTCAAACAGgtctctgctctgctgtctgattccttaaacaagttaaacaggtctttttctaaactatgtgtggtttttattacag

Basic information

species Arabidopsis thaliana
transcript AT3G19720.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G005848_T01 (Zea mays), 5'ss of exon 4
CTCCTTATTGGGCGATTCTCCTTTTTTCACGTCTGTGCCTTCTGGAAGAGTTGGCTATGGACAGGATTCAGTGTATAAGTCTAATGACGAGTTCAAACAGgtctctgctctgctgtctgattccttaaacaagttaaacaggtctttttctaaactatgtgtggtttttattacag---------------------------
 ||||||||||| |||||||| |||||||| || || |||||||| |||||||||| | | || ||  | ||||  | ||| ||||  ||||| ||  |||| |      | | | |||| | ||| |   || |     | || |  | | || | |  |   | |  | | ||                            
TTCCTTATTGGGAGATTCTCCCTTTTTCACATCAGTACCTTCTGGTAGAGTTGGCTCTTGCCATGAAGCTGTGTTCAGGTCAAATGGAGAGTTTAAGAAGgtatagctagtaccgactgaattctttag--agctttgtggttcctcctgtgaagtgt-cgaattgtacactgcataaacatgcttgcactctagcattaagc

upper sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G07990.2 (Glycine max), 5'ss of exon 2
CTCCTTATTGGGCGATTCTCCTTTTTTCACGTCTGTGCCTTCTGGAAGAGTTGGCTATGGACAGGATTCAGTGTATAAGTCTAATGACGAGTTCAAACAGgtctctgctctgctgtctgattccttaaacaagt---taaacaggtctttttctaaactatgtgtggtttttattacag---------------------
|| | |  | || |||||||| || |||||||| |||||||||||||||||||| | ||||   | ||   |  |||  || ||||| ||||||||||||||     || ||||   |    | | | | |  |   || | |  | | | | ||   | | | | |  ||| | |                        
CTGCATTCTTGGTGATTCTCCGTTCTTCACGTCCGTGCCTTCTGGAAGAGTTGGGTGTGGAAGTGGTTATCTCCATAGCTCCAATGATGAGTTCAAACAGgttaagcctatgctccttttcccttcatatatatatatatatatatatatatatatggtttctctaggatttctcattttcccttcaagttgctttttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125192198|gb|EL207152.1|EL207152
EST:     TTGGCTATGGACAGGATTCAGTGTATAAGTCTAATGACGAGTTCAAACAG                         GCTGTGTCACTTAGAGAAATGGAAGACATTG
genomic: TTGGCTATGGACAGGATTCAGTGTATAAGTCTAATGACGAGTTCAAACAGgtctctgctc ... tttattacagGCTGTGTCACTTAGAGAAATGGAAGACATTG