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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G17750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 || ||||||||||| ||||| || || |||||||||||| ||||||| ||||||||||| || |||||  | || ||||| || |||||||| |  ||||||| ||             |  ||| || | ||  |  | |||       | |  |  ||   |   | |   || ||  ||   ||   || |  | |  ||||      | |   ||||                                             
CCAGAGCCTTGATGAAATCAAGCTCCTGAAGTATGTCAACAAGCATGACCCTGCTGACAAGTACCATCTTTTACGTCTGTACGATTACTTCTATTATCGGgtaaata-------------tgatattttgtgctccttcaaacc-------tttcttattgtcatttagttcccatata--aagcttttagtttatcacaagacatatt-tataaatatacaa--------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
|||||| |||||||||||||| ||||| |||||||| ||| |||||||||| ||||||||||| || ||  | || |||||||| ||||||||||  ||||||| |       |  |  ||||  |   |   ||||||        |   |    |   |  |||    ||| |    |  | || | | |    |                                                                      
TCAAAGTCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaaatttgagcttttactattg-gtagatcctttttcagtgttatttaatttcgattaagtgttgaatttatcacaacttcactgcttgctgacatgtgt------------------------------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 || ||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| || || ||  | || |||||||| ||||||||||  |||||||||       |  |   ||| ||   |   ||||||        |   | | ||      |||    | | |    || | || | | |    |                                                                      
CCAGAGCCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCTGGTGACAAGTACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaagtttgagcttttactcttg-atagatcatttttcagtgttatttaattttgctcaactgttgaatttgtcacaactccactgcttgctggcatgtgt------------------------------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 5
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatg-atgtat-caattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 ||||| ||||| |||||||| |||||||||||||||||  ||||||||||||| ||||| |||||  | |||||| | || || || ||||| |  || |||||| ||| | |   ||  |     |  | || ||  | |  |  |  | |     |    ||  |  || | |  ||| || || | | ||    || |                                                                   
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATACGATTATTTCTATTATCGAgtaagtggattgctattga--tcctcttaatactattacaaattgctttcaaaacaatcaatattcattttaggcacatatacatttttcctatgtcttata-------------------------------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatg-atgtat-caattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 ||||| ||||| |||||||| |||||||||||||||||  ||||||||||||| ||||| |||||  | |||||| | ||||| || ||||| |  || |||||| ||| |     ||      |  |  | || |  |    |  |  | |     |   |||  |  |  | |  ||| || || | | ||    ||                                                                     
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAgtaagtggattgccattgatcctcttaatacttttatacaagttgctttcaaaacaatcaattttcattttgggcacatatacatttttcctatatctta---------------------------------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 |||||||||||||||||||| ||||| |||||||||||  ||||||||||| | ||||| || || || ||  || ||||||| |||||||| |   | ||||||  ||          ||| || || |  | ||| ||            |  ||||    |  |  | |     |||||| ||| |||| ||  |      |       ||| |||||                                             
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTCTATTATAGAgtaagtgaat----------ttggatgttctattgttctact-----------tattgctatcataattttctttca-atcaatagtt-gatttaggcatatttgtatattaagagtctacaa--------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatgcagaattgtatctttttcttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
 |||||||||||||||||||| ||||| |||||||||||  ||||||||||| | ||||| || || || ||  || ||||||| ||||| || |   | ||||||  ||          ||  || || |  | ||| ||      |   || | |  |  |||  |   |      |||||| ||| |||| ||  |      |       ||| |||||                                             
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTTTATTATAGAgtaagtgaat----------ttagatgttctattgttctac------ttattactatcatatttttctttca------atcaatagtt-gatttaggcatatttgtatattaagagtctacaa--------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatg--cagaattg-tatctttttcttttcaacaccgggtggata-ttctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag
||| |||||||||||||| || |||||||||| ||| ||| || |||||||||||||||| |||||  | || ||  ||||||||||||| || |  || |||||| | |  ||     || | | ||  || || ||||| |  |   | |  || || | || | ||   |   || | || || ||||   | |   |                                                                      
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaagac-tggttta-cacttgtattaatatctc---------------------------------------------------------------------

upper sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 11
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtaga-tagatgcagaattgtatcttttt---cttttcaacaccgggtggatattctgctgctttggtgctatgatgtatcaat-----tgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag-------------
||| || |||||||| ||||| |||||||||||| ||||| |||| || |||| ||||||  | |||||| | || ||||| |||||||| |||  |||||||| |||  | |        ||| || | |||   |  | |         || |   |     |     || |    | ||||   |      || ||| |  ||  ||         || | |  |  |      |||| |||  | |   ||  |     || | | |||  |             
TCAGAGTCTTGATGAAATCAAGCTTCTCAAGTATATCAACAAGCACGACCCTGGTGACAAGCACCATCTCTTGCGGCTGTACGACTACTTTTACCACCGGgtaattagggtggcctttttgttgcatgtctttgagccatgcggacttctctgtactgtagaaagtgaatgtacacctacgtatagctgtgtgcgtgcgagtttgtggaggcgcgcaagcgagtgtgtgtacacctttgcctttggtt-tatataggtaagcgctaaatattggtggtggtgattgtag