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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgtggacacttaatgaaagtttcatacagagagttgtataatctcattctcaaagttttttcataaagtttggctttgttattgaagttcgttaccgttcattccttaatctttgacctatatgatctagacctccctttgattttcaagtctttatttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15660.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075951|gb|DR371708.1|DR371708
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|164010515|gb|ES151611.1|ES151611
EST:     GACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCG
genomic: GACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCC-TACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCG
EST: gi|19874734|gb|AU235565.1|AU235565
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|125275867|gb|EL289952.1|EL289952
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|86079164|gb|DR374921.1|DR374921
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|86081518|gb|DR377275.1|DR377275
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|19740939|gb|AU226292.1|AU226292
EST:     GAAACATTCTAGAAGACCAAGAGGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: GAAACATTCTAGAAGACCAAGA-GTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|125261988|gb|EL276073.1|EL276073
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTC
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTC