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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGAAGATTGAGAAAGCTCGACTATTGATTCTAGGCGGTGGACTTGAGTATCAAAGGGTCTCAAACCAGTTATCAAGTTTTGATACTTTGTTGCAACAGgtgaaatttgcctgccgcttacatatttctttttcttcctgttggtggttagaaatggattttgttatctatgtctaaacccttctacctcttaaacatgttttggttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G14270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 3
TACGAAGATTGAGAAAGCTCGACTATTGATTCTAGGCGGTGGACTTGAGTATCAAAGGGTCTCAAACCAGTTATCAAGTTTTGATACTTTGTTGCAACAGgtgaaatttgcctgccgct-------tacatatttctttttcttcctgttggtggttagaaatggattttgttatctatg-tctaaacccttctacctcttaaacatgttttggttttcag------------------------------------------------------------------
  | || || |||||| | ||  | ||||| || || || |  |||||||| ||  |||| || ||||  || |||||||||||||||||||||||||||||     |    ||||  |       | ||  || || | | | | ||    ||   ||||| ||  | |    ||| ||  ||  |    | ||    |  |     |  ||||| | ||                                                                  
ATCAAAAATAGAGAAACCACGCTTGTTGATCCTTGGAGGAGCTCTTGAGTACCAGCGGGTTTCCAACCTCTTGTCAAGTTTTGATACTTTGTTGCAACAGgttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagt---tactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatag