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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAATgtaagtccctgctgttcagtttcctttctcgtctttgctttgtcacgtaatcgtctgtgtttttttggtcgtaatgtcattagctgcattatatag

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164134926|gb|ES083809.1|ES083809
EST:     GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAAT                         GTAACAATGCTTAGTGGTATTTCA
genomic: GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAATgtaagtccct ... cattatatagGTAACAATGCTTAGTGGTATTTCA
EST: gi|152038127|gb|BP808947.2|BP808947
EST:     GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAAT                         GTAACAATGCTTAGTGGTATTTCAACAACGAGCACA
genomic: GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAATgtaagtccct ... cattatatagGTAACAATGCTTAGTGGTATTTCAACAACGAGCACA
EST: gi|152037856|gb|BP800329.2|BP800329
EST:     GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAAT                         GTAACAATGCTTAGTGGTATTTCAACAACGAGCACAAAAGTAAGCAG
genomic: GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAATgtaagtccct ... cattatatagGTAACAATGCTTAGTGGTATTTCAACAACGAGCACAAAACTAAGCAG
EST: gi|124946307|gb|EL022241.1|EL022241
EST:     GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAAT                         GTAACAATGCTTAGTGGTATTTCAACAACGAGCA
genomic: GCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACTGGCAATgtaagtccct ... cattatatagGTAACAATGCTTAGTGGTATTTCAACAACGAGCA
EST: gi|164145389|gb|ES126983.1|ES126983
EST:     TGGTACTGGCAAT                         GTAACAATGCTTAGTGGTATTTCAACAACGAGCACAAAACTAAGCAGCCCA
genomic: TGGTACTGGCAATgtaagtccct ... cattatatagGTAACAATGCTTAGTGGTATTTCAACAACGAGCACAAAACTAAGCAGCCCA