Sequence
atgc intronic sequence ATGC exonic sequenceTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGgtaacaatcttatgatgagaactttgtaatatgttaaccaatgatacaaaaggatcgtatctgacacttaaaatcatttattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G13580.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 4
TATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGgtaacaatcttatgatgagaactttgtaatatgttaaccaatga--tacaaaaggatcgtatctgacacttaaaatcatttattgcag------------
|||||||||||| || || || |||| ||||||| |||| ||| ||||||| ||||||||||| | || | || | | | | || | | || || || ||| | | | | || || ||
TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgcttacaaattacaaaatgagattttttttgttggtcacttattgaattgctgttactggtattgatcttaatcaatgctagtaagtaacttga
upper sequence: AT3G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 4
TATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGgtaacaatcttatga--------tgagaa-ctttgtaatatgttaaccaatgatacaaaaggatcgtatctgacacttaaaatcatttattgcag--------
|||||||||||| || || || |||| ||||||| |||| ||| ||||||| |||||||||| |||| | ||||| |||| | | || | |||| | || | ||| | ||||| | ||| |
TATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaaactacttacaaatacaatttgagattcttttttgttggtcacttgatgaattgctgctagtgtttttgatctt---aatcaatgcttgtaagtaacttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124962655|gb|EL037043.1|EL037043EST: CCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAG ATTTTCAATGGTGTGTT
genomic: CCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGgtaacaatct ... tttattgcagATTTTCAATGGTGTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGgtaacaatcttatgatgagaactttgtaatatgttaaccaatgatacaaaaggatcgtatctgacacttaaaatcatttattgcag
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - AAGAAG