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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCAAGGTCACACAGAAAGGAGGACTATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGgttttttttttttaatattgagagctcactaacttggactagttgatagtctttctctttctgattggatttatttattgtgtttggcgtgattgtggacataacatttgtctactgctaaaaacctccatctgatcaagaatttttattggtgtcatag

Basic information

species Arabidopsis thaliana
transcript AT3G13340.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831951|gb|CK121635.1|CK121635
EST:     ACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAG                         CTGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCA
genomic: ACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGgttttttttt ... ggtgtcatagCTGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCA
EST: gi|164025595|gb|ES121623.1|ES121623
EST:     ACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAG                         CTGAGAAATTTGGTATGG
genomic: ACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGgttttttttt ... ggtgtcatagCTGAGAAATTTGGTATGG