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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGgtaaatgctgttttatgcttcttaatcaatatacaactatcaccttatgtgatatttttcgtggcttgggaacttttaataacataattctgtattgacatttcttatcag

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G26820.2 (Glycine max), 5'ss of exon 3
AAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGgtaaatgctgttttatgcttcttaatcaatat----acaactatcacct-tatgtgatatttttcgtggcttgggaacttttaataacataattctgtattga-catttctt-atcag--------------------------------
    || ||| | |||||||||||  |||| ||||||||||||||||| ||  | ||||||||| | || || ||||||||||||||||| ||||||||||||  || | | |  | |||   |   |||||    |  |||| || |  | |||||  || ||| |   | ||||    || |  |  | |||   | || |  |||| || || |                                 
TTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGgta--tgatatgtcctcctttccacctaatattttcagtactaacaacaatttgtgaatttgttcttttttggggattaattcagtaggttattgaattttaagtatttgttgattaagttcaaaagattgacagaaaaggcatatacag

upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G15720.1 (Glycine max), 5'ss of exon 4
AAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGgta-aatgc-tgttttatgcttcttaat-----caatat--acaactatcacct-tatgtga---tatttttcgtggcttgggaacttttaataacataattctgtattgacatttc--ttatcag----------------------------------------
    || ||| | |||||||||||  |||||||||||||||||||||| ||  | || |||||| | || || ||||||||||||||||| ||||||||||||  ||   |  |   | | || ||||     || |    |||| || || |  | |||||   | ||| |  |  |||      |||  ||||  | | |  | | |   ||||    |||  |                                        
TTCTCTTTACACACTTGGCCTTTTCTTGGGAACCATCTATTCTGTTCCTCCATTGAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGgtatgatatatcctcctttcctcctaattttttcagttctaacaagtaacaacaatttgtgaatctgtttattttttctttttttttttggataaattcagtaggcaattgaattttaagtatttgttgatatagttgaaaagattgacagaagaggcttatgcag

upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 5'ss of exon 4
AAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGgtaaatg--ctgttttatgcttcttaatcaatatacaactatcaccttatgtgatatttttcgtggcttgggaacttttaataacataattctgtattgacatttcttatcag
    || |||| |||||||||  |||| || ||||||||||||||||| ||  | |||||||| ||||| ||||||||||||||||| || ||||| |||||| |     |||  | | | | ||    |    |     || ||    ||   |   |  ||||   |   |  | |   |      ||   |||| |              
TTCGCTTTACTGTCTTGGCCTCGTTCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCAGTTGCAGCATTTCTAATAATTGCGACGgtatagcatttgtcctctcccttttttctatcggatggtaataactgagtggattgagtaacgtgaagtttcagttgtagttggatccatatggtatggt-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125256918|gb|EL271003.1|EL271003
EST:     CATTTCTTATTATTGCCACG                         GTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCT
genomic: CATTTCTTATTATTGCCACGgtaaatgctg ... ttcttatcagGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCT