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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G11940.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataac-ttaaagtgaagctaatgattgaactgttatgtcttgcag
| |||||||| ||  | ||   ||| || || ||||||||||| || ||||||||||||||||||||  | ||||| || ||||||||||| ||||||||||||||   |||        |||| |  ||| | | || |   ||  |  |     ||| |  || | | || | || |||
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaat---ctt-------gcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgta-aatacacttccaa---atgacttcactattgttcatataacttaaagtga--agctaatgattgaactgttatgtcttgcag
                 ||    || ||||| ||||||||||| || ||||||||||||||||| ||  | || || || ||||||||||| ||||||||||| || ||| |  ||    |   |||   | ||||||  || |    | || |    |  ||   ||| ||  | ||| || |||
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaat-tgtgtttcag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgta-aatacacttccaa---atgacttcactattgttcatataacttaaagtga--agctaatgattgaactgttatgtcttgcag
| |||||||||||  | ||    || ||||| ||||||||||| || ||||||||||||||||| ||  | || || || ||||||||||| ||||||||||| || ||| |  ||    |   |||   | ||||||  || |    | || |    |  ||   ||| ||  | ||| || |||
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaat-tgtgtttcag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcact--attgttcatata--acttaaagtgaagctaatgattgaac-tgttatgtcttgcag---
| |||||||||||  | ||    |||||||| |||||||| || || |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||| | | |    || ||  | |   |||||  | |   |  |    ||    |  || |    | ||  |  |||||      
TCACCACTGGTGCCAGGGAGAGCGCTTTCAGGAACATCAAAACCATTGCTGAGTGCCTTGCAGATGAGTTGATCAACGCTGCCAAGGGCTCTTCCAACAGgtatatata-tcctgtctggctatatttggttgtttttttcctatctgcgatgtgaattgtgctcattcatggcaattcttgtcacag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttc---actattgttcatataacttaaagtgaagctaat---gattgaactgttatgtcttgcag
| |||||||||||  | ||   ||||||| | |||||||| || || || ||||||||||| |||||  |||||||||| ||||||||||| ||||||||||| |||   | ||   |  ||||    ||||   | ||    |   | |||||  |  |     | |  |   |   | || |||
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 4
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaat---------------------acacttccaaatgacttcactattgttcatataacttaaagtga--agctaatgattgaactgttatgtcttgcag----------------
| || |||||||| || ||||||||||||||||| || ||||| || ||||| ||| | ||||||||| | || || ||||| || || || ||||||||||| |                       || || |  |||  ||   | || ||||| |   | |   |       |  || |||   | || |  |    |                 
TAACAACTGGTGCACGCGAAGCTGCTTTCAGAAATATTAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCGTCCAACAGgtatacttctaggaattctatgtggaggcattttctgatgtattttattttcttcatctctttcatttttttttattggtgtttgggtttttttaccgaaaaataatactccatttcag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatac------acttcca-aatgacttc--actattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag-------------
  |||||||| || || || || || ||| | ||||||||||| || || |||||||| ||||| ||  || | ||||| ||||||||||| ||||||||||     |      |||  ||  |||   |   | |   |     | |       |||| ||    |   |   ||    ||    |||             
--ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgcgtactagcacgatgggctaggattggaggcgccagaggccgccgtgaggcgggcggcagtggtgccgggttggtcaggcatccaagaaaa

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaa--ctgttatgtcttgcag-----------------------------
|||| |||||||| || ||  |||||||||| ||||||||||| || || |||||| | ||||| ||||| || |||||||| || || |||||||||||||||| |  |||  | |  || |   | ||||    || || ||  | |    |     ||||   ||||||    |  | |                             
TTACTACTGGTGCGCGAGAGTCTGCTTTCAGGAACATCAAGACCATTGCAGAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaa-atgcttg-agacaaccttgtt-ttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttcca--aatgacttcactattgttcatataacttaaagtgaagctaatgattgaac---tgttatgtcttgcag-----------------
| |||||||| || || ||  ||||||| |||||||||||||| || ||||||||| | |||||||| ||||| |||||||||||||| || || ||||||||   | | || |   || | ||||   ||| | | | |   ||  ||   |  |  | ||   ||   | || || ||||  |                 
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatt-tacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 4
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag
| || ||||| ||||| ||   ||||||| ||||||||||||| || || |||||||||||||| ||  | || || || |||||||| ||||||||||||||  | | |  ||| |     |  || | |  |  |     ||||||    ||  |  ||||  | | |          
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacct-cgcggccagaaattcttcctctcgc-ctcaagctctaaagtt--ccttgtttttgatgtttcag---------

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ16239 (Selaginella moellendorffii), 5'ss of exon 4
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag
| || ||||| ||||| ||   ||||||| ||||||||||||| || || |||||||| ||||| ||  | || || || |||||||| ||||||||||||||  |   |  ||| |     |  || | |  |  |     ||||||    ||  |  |||   | | |||| |     
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTCGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacct-tgcggccagaaattctttctctcgc-ctcaagctctaaagtt--ccttgtttttgt-ttttgatgtttcag--

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 4
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag---
| |||||||| ||||| ||   ||||||| | ||||||||||| || || |||||||||||||| ||  |||| || || || ||||| || |||||||||||      ||||| |    | |   | | | ||||     || ||   ||   |  | |    ||||  |   |||||    
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgta------cttccta----cattgttctagctcatgc--tttgaaagaaactaagagctccttctgtgcttgtttgcatcag

upper sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 4
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag---
| |||||||| ||||| ||   ||||||| | ||||||||||| || || |||||||||||||| ||  |||| || || || ||||| || |||||||||||      ||||| |    | |   | | | ||||     || ||   ||   |  |      ||||  |   |||||    
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgta------cttccta----cattgttctagctcatgc--tttgaaagaaactaagagccccttctgtgcttgtttgcatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502573|gb|HO208113.1|HO208113
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGA
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGA
EST: gi|86084216|gb|DR379975.1|DR379975
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|86081585|gb|DR377342.1|DR377342
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|124745564|gb|EH836376.1|EH836376
EST:     TGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: TGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|86078785|gb|DR374542.1|DR374542
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|116479315|gb|EG521907.1|EG521907
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|125215746|gb|EL229830.1|EL229830
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAG
EST: gi|124832412|gb|EH916851.1|EH916851
EST:     TGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAG
genomic: TGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAG
EST: gi|164142396|gb|ES083210.1|ES083210
EST:     TCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: TCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|164157551|gb|ES063415.1|ES063415
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGG
EST: gi|125117365|gb|EL166538.1|EL166538
EST:     CAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: CAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|125255709|gb|EL269794.1|EL269794
EST:     CAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTG-AAGAGTTGCCAAGGCTAATCG
genomic: CAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|116465715|gb|EG508307.1|EG508307
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|116397675|gb|EG440267.1|EG440267
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|125040794|gb|EL113063.1|EL113063
EST:     CTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGG
genomic: CTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAA-GAAGAAGGATGAGATTGAAAGAGTTGCCAAGG
EST: gi|116480566|gb|EG523158.1|EG523158
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|125125651|gb|EL171086.1|EL171086
EST:     ACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: ACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
EST: gi|86074460|gb|DR370217.1|DR370217
EST:     GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG
genomic: GAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacac ... tgtcttgcagCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataacttaaagtgaagctaatgattgaactgttatgtcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT