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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G11490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaa---gttttttgaatgaatctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag
 |||||  | ||| ||||||||||||||||  |    |||||  | ||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||     | |   ||| |    || | |||| ||   |||| |||    ||  |      ||    |  ||| ||||
GTGGGCAGTTAATTTAATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAATGCTCGTAACATTGCTATGGTTTTTGCACCAAATATGACTCAGgtaatgcactgtcctaataataaacttatgatt-ttaagtgtggtcgatgcttactgtcatgcacatatgtaat-gcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaa---gttttttgaatgaatctctaaagat--tgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag
 |||||| | ||| | ||||||||||||||  |    || ||| | |||||||||||||| || || ||||| |||||||||||||| || ||||||||||||    ||| |   | ||      |     |  | ||| ||  | | | ||| |      || ||    |  ||| ||||
CTGGGCTGTTAATTTGATGGCTGATGTTGTCCAAGAAGAGCAAATAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCAAATATGACTCAGgtagtgtgttatcctattgcgatcatggtactgatatttcattaggtgg-attctaactgttgtcacacatgtaat-gcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaag---------ttttttga-atgaatct--ctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag------------
|||||| || ||  ||||||| ||||||| | | |||||| |  | |||||||||||||| || || |||||||||||||||||||| ||||||||||| |||||         |||||||   | ||| |     | | || |    |  |  |  ||||| || | |||  |||  | | |   |             
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaagattgtttgatgt---gttcgtattttggt---aaatgacatcagtcaaattgcag---------------------
|||||| || ||  ||||||| ||||||| | | |||||| |  | |||||||||||||| || || ||||||||||||||||| || ||||||||||| |||||  |    ||| | | ||||  |    | |  | |   |||    | || |    || |    | | | || | | |                      
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGCAATATTGCAATGGTTTTTGCTCCAAACATGACTCAAgtaagagt---aaatcattttctattgtaaatgtagtatacagttttgctcttagccccaatttttgttattgaattcgtaaaagtcaacctcatcttattgg

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G08610.1 (Glycine max), 5'ss of exon 5
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTT-GCACCTAACATGACTCAGgtaagtt---------ttttgaatgaatctctaaagattgtttg----atgtgttcgtattttggtaaatgacatc--agtcaaattgcag---------
 ||||  || || || ||||||||||||| | |  |||||||  | ||||||||||||||||| ||  |||||||||||||| ||||| ||||||||||| ||||||          |||| | || |  | |   |||||| |     |  | || || |||   |   |  |||   | ||||     |          
-TGGGGGATAAACCTTATGGCTGATGTTGCTCAACTGGAACATTTGAACAAGATGAATGCTCGTAATGTTGCAATGGTTTTTTGCACCAAACATGACTCAAgtaagtcaaaatcttgtttttattgtagtttttgtgattgtctccctcaaatcttggtttttgatttgttaccattttattcaaggcttaattaccaatt

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaa--gattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag-------------------------
|||||| || ||| ||||||||||||||| | | ||||||||  | |||||||||||||| || ||  | || ||||| |||||||| ||||||||||| || |||   ||   |   |  | |||      | ||          | ||    | | ||| |||   ||| || |                           
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatc---caagtttcctgtttcctgacaggtggagagtatat

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagt--tttttgaatgaatctctaaagattg----tttgatgt-gttcgtattttggtaaatgacatcagtcaaattgcag----------------------------------------------
 |||||| ||||| | ||||||||||| ||  |    |||  | | ||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||||  | || ||      |  |  |   ||    ||  ||    ||     |||  |        |    |  |||   |                                              
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S1_829V6.2 (Physcomitrella patens), 5'ss of exon 5
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaag-----ttttttgaatga-----atctctaaagattgtttgatg-----tgttcgtattttggtaaatgacatcagtcaaattgcag----------------------------------------------------------------------------------
 ||||| || ||  | ||||| ||||| || ||| ||||     | ||||||||||||||||| || ||||||||||| || || ||||| ||||| |||||| |      || |  | ||      |||| || |   ||||  |||     || || | ||||   | |||  | |    | |||||                                                                                    
CTGGGCCATTAACTTGATGGCCGATGTCGTGGAGCTGGAGTCTTTCAACAAGATGAATGCTCGCAATATTGCAATGGTATTCGCTCCTAATATGACACAGgtatggagcacttctgcagtggtctctatctgtagaagctgttgtatggcgaatggtcctcttttttcacatggtaact-caagattgcttatcctaaaaggtggttttccgttagcatgttatgtgtcaatgaaggttatccctttactgattcatatttactgccctgcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaag-----ttttttgaatgaa-----tctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag------------------------------------------------------------------------------------------------------------
 ||||| ||||| || ||||| ||||| || ||| ||||       ||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||         | ||   ||       ||| |  | | |  || | | | |   | | ||     ||   ||   |   ||                                                                                                                
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagttta-gagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag----------------------------------------------------------------------------------------------------------------
 |||||| |||| || ||||| |||||||| |||   ||    || ||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||  | |   || |  | |     |      |  |||     ||||  ||   ||| |  ||  |  | | |                                                                                                                
CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgtatgtgatgtcgctgcaattgtgcgcctccccaaacttgtgacacttttcttaccagactt--gtagagattcggtcctgtagttagcagactctccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S256_73V6.1 (Physcomitrella patens), 5'ss of exon 6
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagtt-ttttgaatgaatctctaaagattg---tttgatgtgttcgtattttggtaaatgacatca------gtcaaattgcag-----------------------------------------------------------
||||||| ||||||| ||||||||||| ||| |   ||||    | ||||||||||| ||||  |||||||||||||| ||||| ||||||||||| |||||| ||  || ||||    ||   | |   ||   |||  | ||  | || | ||   ||  | |||       | |  ||| |                                                             
TTGGGCTGTCAATCTGATGGCTGATGTAGTTCAAGAGGAAACGTTCAACAAGATGAACGCTCACAACATTGCAATGGTATTTGCTCCTAACATGACCCAGgtacgtcattctgaacccctcctcagatgctgggctttattctgaacataatctgcccaaaaaaatcgtccttcgcctcatttcgaaacaaaaattccagttcgacattatttatttatttcttctccgacctttgtatttgcag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ22564 (Selaginella moellendorffii), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaa-attgcag
 |||||  | ||||| ||||| || || |   ||  |||       |||||||||||  | || ||||| |||||||||||||| || ||||||||||||||| |||  |          | |   | ||| ||  ||| ||| | || ||  |  |     |  |     |  |||
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgttcctctttca----tttggtgcttggtttttgttttctt-ttctgtaatgtatttccttttgctgtcccag

upper sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ12967 (Selaginella moellendorffii), 5'ss of exon 4
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttt---tttgaatgaatctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag
 |||||  | ||||| ||||| || || |   ||  |||       |||||||||||  | || ||||| |||||||||||||| || ||||||||||||||| |||    ||| | |   |   |     ||||||  | | |  ||| | |  |   |         | |       
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgttcctctttcatttggttcttggtttttgttttgt-tttctgtaatgtatttccttttgctgtcccag------