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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactcctctatttgttatggtaacttaagctgccacaccaagtaaaaaagctcatgtctattcttctgtttcag

Basic information

species Arabidopsis thaliana
transcript AT3G11170.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124737206|gb|EH828608.1|EH828608
EST:     TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: gi|125233958|gb|EL248043.1|EL248043
EST:     TCTTTAGACTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGA
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGA
EST: gi|124839720|gb|EH924159.1|EH924159
EST:     ATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
genomic: ATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: gi|125136142|gb|EL176172.1|EL176172
EST:     TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGA
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGA
EST: gi|124958789|gb|EL033508.1|EL033508
EST:     CCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
genomic: CCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: gi|124965690|gb|EL039857.1|EL039857
EST:     TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCT
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCT
EST: gi|125043481|gb|EL115750.1|EL115750
EST:     CTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGAACAGTGA
genomic: CTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGA-CAGTGA
EST: gi|124942171|gb|EL018460.1|EL018460
EST:     CCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
genomic: CCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: gi|124888514|gb|EH967416.1|EH967416
EST:     TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG                         TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAG
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAG