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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACGGAATAAAATCGCACTGAGAATGGATGTGCTTTGTGATAGCAAAGGTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtcaaattgtgaacactttacagctcggttttttgtttccctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttag

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 3
TGAACGGAATAAAATCGCACTGAGAATGGATGTGCTTTGTGATAGCAAA---------GGTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgt---gagtgtcaaattgtgaacactttacagctcggttttttgtttccctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttag
            | | |||||  | ||||| || ||||||| |   |||         |  ||||||||||||||||| || || ||||| ||||| ||||||||||||||   |  | || |    |  | | |||     | |      ||    | | |     |    ||       |    ||  ||||   | ||   | |     
---------CCCAGTTGCACTTCGGATGGAAGTTCTTTGTGGTTCTAAAAAAACTAATGCCTGTCCATCGGGAGGTGTTGGGGTCTATAATCCTGGCTACTGGGGCATGgtatggcatttccatgcattcataattttgcttttgagcaaatgcacacattgaacctactcccaccttcccaa--attagttcacgctttaggatttaaat-

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G27460.3 (Glycine max), 5'ss of exon 4
TGAACGGAATAAAATCGCACTGAGAATGGATGTGCTTTGTGATAGCAAAGGT---------TGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtcaaattgtgaacact-ttacagctcggtt-----ttttgtttccctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttag
          ||  | |||||  || |||| ||| | ||||| |||||||||         || ||  | |  ||||| || || ||||||||||||| |||||||||||||||  |  |||||  | |  |    ||  |   |      |  | | | | | | | ||  || || |     |       |   |  |  |        | | 
---------CAAGGTTGCACTCCGATTGGAGGTGTTATGTGACAGCAAAGGTGACAACATCTGCCCCGCTGATGGTGTTGGTGTCTATAACCCTGGTTTCTGGGGCATGgtgagact--aattgataccgttgcctcaattacatcataaatcctatgtgcatagatttcctgaacaagaa---aaaaagacaaaaacctgatgaaaaacataa-

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G30450.1 (Glycine max), 5'ss of exon 4
TGAACGGAATAAAATCGCACTGAGAATGGATGTGCTTTGTGATAGCAAAGGT---------TGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtcaaattgtgaacacttta-cagctcggtt-----ttttgtttccctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttag
         |||  | |||||  || |||| ||    ||||| ||| |||||         || ||| | |  ||||| || |||||||| ||||||| |||||||||||||||  |  |||||  | |  |  | ||  |   |      | || | | | |   | ||  || ||       ||      |      |   ||  | |     
---------TAAGGTTGCACTTCGATTGGAGGTATCATGTGACAGCGAAGGTGACAACATCTGCCCAGCTGATGGTGTTGGTGTTTATAATCCTGGTTTCTGGGGCATGgtgagact--aattgatacccttgcatcaattatatcataaatcttatgtgcatatatttcctgaacaaaaaaaaagacaaaaaactgaataacataattta----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444622|gb|EG487214.1|EG487214
EST:     GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATG                         AGTATTGAAGAAG-AAAGAAGTACAAG-TGGCTCTTTATGTGCGTTCGACT
genomic: GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT
EST: gi|125042208|gb|EL114477.1|EL114477
EST:     GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATG                         AATATTGAAGAAGGAAAGAAGTAC
genomic: GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTAC
EST: gi|125277169|gb|EL291254.1|EL291254
EST:     ATAACCCTGGTTACTGGGGCATG                         AATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT
genomic: ATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT