Sequence
atgc intronic sequence ATGC exonic sequenceGCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGgtgagtctttctgagattatcaagaatcatgtcatttcattacgggcttgttcaaataatgtgtttcctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G33600.1 (Glycine max), 5'ss of exon 4
GCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGgtgagt-----------ctttctgagattatcaagaatcatgtcatttcattacg-ggcttgttcaaataatgtgtttc--ctcag--------------
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GTACCATATTGGTTAACTTATGACTTCCCACCAAAAGTAAGGGAGAAATTAAATATTCAGTGGGGATCTGATTGGAAGGGTCAGGCACAGAAATGgtaaactcttgaatatgctttgtctggatagaataaaactcataagaacagtacacaaccaaattatataatgtttaacaacctagaaccaattatctaa
upper sequence: AT3G10620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G33990.1 (Glycine max), 5'ss of exon 4
GCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGgtgagtctttc--tgagat-tatcaagaatcatgtcatttcattacgggcttgttcaa--ataatgtgt----ttcctcag-------------------
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GTACCATATTGGTTAACTTATGACTTCCCACCAAAAGTGAGGGAGAAATTAAATATTCAGTGGGGATCTGATTGGAAGGGTCAGGCGCAGAAATGgtaaccacttgaatatgctctgtctggatagaatacaactcataagaactgtacacaaccatattatataaagtttaacaacctagaaccaatcatataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072998|gb|DR368755.1|DR368755EST: AAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATG GTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA
genomic: AAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGgtgagtcttt ... gtttcctcagGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGgtgagtctttctgagattatcaagaatcatgtcatttcattacgggcttgttcaaataatgtgtttcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG