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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGTGCACGCAATAAACAATTACATCAGTTGTGGTACCGTTCTGTTACATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttggattagctgtaacatttctttgtttattttgagtttacagtgcttgctatgtatctgcgctgctatcaagtttcatacttcattcatcatct...

Basic information

species Arabidopsis thaliana
transcript AT3G10380.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416158|gb|EG458750.1|EG458750
EST:     CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAG                         GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
EST: gi|19878577|gb|AU239408.1|AU239408
EST:     CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGNCAAG                         GGTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGNTTTACGCT
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCT
EST: gi|125262581|gb|EL276666.1|EL276666
EST:     TTTTGGATCAAATCGAGGGCATTGCCAAG                         GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
genomic: TTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
EST: gi|116414055|gb|EG456647.1|EG456647
EST:     CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAG                         GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT