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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGgtaagctataacatgatatccaccctatcttttgttccaaattatgtaaaggtcaatctcattgttaattaagttagtatttgggataatcttgttgattttgaaggttagatttcccagcaacccatacttgggtctgcttttcgctaattttacttatggaacaatgtgggattgataatcttaattctgacag

Basic information

species Arabidopsis thaliana
transcript AT3G09810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G06590.2 (Glycine max), 5'ss of exon 4
TGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGgtaagctataacatgatatccaccctatcttttgttccaaattatgtaaaggtcaatctcattgttaattaagttagtatttgggataatcttgttgattttgaaggttagatttcccagcaacccatacttgggtctgcttttcgctaattttacttatggaacaatgtgggattgataatcttaattctgacag
|||||   ||| ||||| | ||| ||||||||||||  ||| ||| | ||||| |||||||||||||| ||||||||||                         | ||| |  || | |||||   |  ||   ||||   || || ||||||||  || |     ||  |||   ||     |  |||| |   |   ||  |                                                                   
TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaa-------------------------tattggtgaaattgatgtatgagaaaactgcatttggaaata-gttagtatcaggaaa----ttaatgacactg----cttaattttctgaccttcctcag------------------------------------------------------------------

upper sequence: AT3G09810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G20790.1 (Glycine max), 5'ss of exon 4
TGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGgtaagctataacatgatatccaccctatcttttgttccaaattatgtaaaggtcaatctcattgttaattaagttagtatttggga--taatcttgttgattttgaaggttagatttcccagcaacccatacttgggtctgcttttcgctaattttacttatggaacaatgtgggattgataatcttaattctgacag
|||||   ||| ||||| | ||| ||||||||||||  ||| ||| | ||||| |||||||||||||| ||||||||||                         | ||| |  |  | |||||   |  ||   ||||   || ||  ||||||||||| |  ||||  | ||| || |     | |  || | |||                                                                            
TGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaa-------------------------tattggtgaacttgatgtatgagaaaactgcatttggaaatac-ttagtatttggaaattaatgatattggttatttttctgaccttccgcag----------------------------------------------------------------------------

upper sequence: AT3G09810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 5'ss of exon 4
TGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGgtaagctataacatgatatccaccctatcttttgttccaaattatgtaaaggtcaatctcattgttaattaagttagtatttgggataatcttgttgattttgaaggttagatttcccagcaacccatacttgggtctgcttttcgctaattttacttatggaacaatgtgggattgataatcttaattctgacag
||||||   |||||||| | |||||| || |||||| | || ||| | ||||| |||||||||||||||||||||||| |            ||      |||| | ||     || ||    | ||    | | | ||||  ||         |   |   || | |  || | |||||  |||      ||| ||  |                                                                       
TGTTGTCGGGAAGTTGCAGAGAAGTACCCAGAGATAAAATATGAGGAAGTTGTCATTGACAATTGCTGTATGATGgtatg------------attgtttttatcatatgaatataaatacaagagggggtgtgtgagtgtttgtt---------tcaagagcaaacctagtggtgttgaaattta-----tccaccatgct----------------------------------------------------------------------