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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAAATGTGCACTCGAGTCCTCTTCTATTTGATATCGACAAAGATGGTGTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAGgtaattctttctctcagatgatggatattcttttgtctgttatcatcgatccttagagttttgtgggttttgcatatgatactttcttgtttccag

Basic information

species Arabidopsis thaliana
transcript AT3G09090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 4
AGTCAAATGTGCACTCGAGTCCTCTTCTATTTGATATCGACAAAGATGGTGTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAGgtaattctttctct-----cagatgatggatatt---cttttgtctgttatcatcgatccttagagttttgtgggttttgcatatgatactttcttgtttccag
| |||| |||||| || ||||||||||||| ||| || ||||||||||| || |||||||| ||| |||| ||||||||||  |||||||| |||||||||| | | ||| |       || ||  |  | |||   |||   |     || | | ||   | ||| |   |   |   |  | | |||  ||     ||  ||
AATCAACTGTGCATTCTAGTCCTCTTCTATATGACATTGACAAAGATGGAGTGAGAGAAATAGCTTTGGCAACCTACAATGGTGAAGTGCTGTTTTTCAGgtgacttttttttcttttccatattttcaaaattttgcttccatgaacaattacccattacttgaggtgcttttatcaaggttgtaataagttaccaattttag

upper sequence: AT3G09090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 4
AGTCAAATGTGCACTCGAGTCCTCTTCTATTTGATATCGACAAAGATGGTGTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAGgtaattctttctct-----cagatgatggatattcttttgtctgttatcatcgatccttagagttttgtgggttttgca----tatgatactttcttgtttccag
| |||| |||||| || ||||||||||||| ||| || ||||||||||| || |||||||| ||| |||| ||||||||||  |||||||| |||||||||| | | | | ||      || ||  |  | ||| |  | ||  ||| |    | || |    | | |||  |||  ||    | | |||  ||     ||  ||
AATCAACTGTGCATTCTAGTCCTCTTCTATATGACATTGACAAAGATGGAGTGAGAGAAATAGCTTTGGCAACCTACAATGGTGAAGTGCTGTTTTTCAGgtgactttctttccttttccatattttcaaaattttgct-tccattaacgattacccattacttgtggtgcttttatcaaggttgtaataagttaccaattttag

upper sequence: AT3G09090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 4
AGTCAAATGTGCACTCGAGTCCTCTTCTATTTGATATCGACAAAGATGGTGTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAGgtaattctttctctcagatgatggatattcttttgtctgttatcatcgatccttagagttttgtgggttttgcatatgatactttcttgtttccag------------------------
|||||| ||| || || ||||||||||| | |||||||||||| |||||||| |||||||| ||| |||||||||||||||  |||||||| || |||||||| |  ||| |      ||  |||    ||| ||  ||||||    |||  ||   |||  |   ||| ||| |     | ||||   | ||  |                        
AGTCAACTGTCCATTCCAGTCCTCTTCTGTATGATATCGACAAGGATGGTGTAAGAGAAATAGCTTTGGCTACCTACAATGGTGAAGTGCTTTTCTTCAGgtagtcttttgttatttttgtaggaatggcttctgattgttat--gtgatgtttgttgttaagctagttctgc-tccatcattttccaatctcaggacagttccgtctattatatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035986|gb|AU236941.2|AU236941
EST:     GTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAG                         GGTATCAGGCTTTTTGATGTCAGATAAGCTAGAAGTGCCACGTAGAAAAGT
genomic: GTTAGAGAAATTGCTCTGGCTACCTACAATGCCGAAGTGCTCTTTTTCAGgtaattcttt ... ttgtttccagGGTATCAGGCTTTTTGATGTCAGATAAGCTAGAAGTGCCACGTAGAAAAGT