1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAgtatgtaatatcttctattaggttgaaatttatgttatgttatggatgatgcatatataacgttcctatccttttcggtcattcacag
species | Arabidopsis thaliana |
transcript | AT3G07170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAA GTTGATATGGATGCTCTCATGCATATGACAGATGATGAEST: gi|86088342|gb|DR384101.1|DR384101
genomic: AATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAgtatgtaata ... tcattcacagGTTGATATGGATGCTCTCATGCATATGACAGATGATGA
EST: CAACAGCGTTTCAAGTGGAAGAA GTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGEST: gi|86077814|gb|DR373571.1|DR373571
genomic: CAACAGCGTTTCAAGTGGAAGAAgtatgtaata ... tcattcacagGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATG
EST: TAGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAA GTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATG
genomic: TTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAgtatgtaata ... tcattcacagGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAgtatgtaatatcttctattaggttgaaatttatgttatgttatggatgatgcatatataacgttcctatccttttcggtcattcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA