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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGAAAGCATGATTTCTCTGCATTTGCTAACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATGgtaaagaagaaagatcttagttctggagaagttagggtaaggatcagactttgaccttgttggtgttttggtgtttag

Basic information

species Arabidopsis thaliana
transcript AT3G06950.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074712|gb|DR370469.1|DR370469
EST:     GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATG                         GGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA
genomic: GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATGgtaaagaaga ... tggtgtttagGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA
EST: gi|19743143|gb|AU228496.1|AU228496
EST:     GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATG                         GGATCTCTTCTACAGCTTGAAGTTGAAGTTTCTGGCTTTTTGTACAGACAA
genomic: GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATGgtaaagaaga ... tggtgtttagGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA
EST: gi|116425548|gb|EG468140.1|EG468140
EST:     GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATG                         GGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA
genomic: GAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTCATTCAAATGgtaaagaaga ... tggtgtttagGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA