Sequence
atgc intronic sequence ATGC exonic sequenceACTTTTTCAACTGGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatcaatcattttttgagttactagagttcataagagacccattgttgtgatttggaacaacttgctagtttctaggcctttggaactctgtagt...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G05910.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G05910.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G41240.1 (Glycine max), 5'ss of exon 4
ACTTTTTCAACTGGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatcaatcattttttgagttactagagtt-cataagagacccattgttgtgatttggaacaacttgctagtttctaggcctttggaac-tctgtagt
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ATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCATTTACTGGGGATAGTGAAGATGAGgtacagtttgata--tcttggtgttcttaaattgatatttttggttaaagaagatgaaataacaaaagttgttgctttacaaatttaagtattatatgtgga
upper sequence: AT3G05910.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G38650.1 (Glycine max), 5'ss of exon 4
ACTTTTTCAACTGGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatcaatcattttttgagttactagagttcataagagacccattgttgtgatttggaacaacttgctagtttctaggcctttggaac-tctgtagt
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ATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCATTTACTGGGGATAGTGAAGATGAGgtacagtttgatatcttggtgttcttaaattgatatttttggttgcaagaaggtgaaataacaaaagttgttgctttacaaatttaagtattatatgtgg-
upper sequence: AT3G05910.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 5'ss of exon 4
ACTTTTTCAACTGGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatcaatcattttttgagttactagagttcataagagacccat----tgttgtgatttggaa--caacttgc-tagtttctaggcctttggaactctgtagt
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ATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTTTTACTGGTGACAGCCAAAATCAGgttggtggtaaaagttctccatgt-actgtgtcccatgacagattaatattatcttacaactgacattccaaccaaaatagttgtta--cttctgagatccca----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116404724|gb|EG447316.1|EG447316EST: AGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAG GCTGCACAACTTCAGTTTAGAGGAGAGCGTATCTGGAGAGCCGCAATAGAT
genomic: AGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatca ... actttttcagGCTGCACAACTTCAGTTTAGAGGAGAGCGTATCTGGAGAGCCGCAATAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTTTTCAACTGGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATCAGgttgaaatcaatcattttttgagttactagagttcataagagacccattgttgtgatttggaacaacttgctagtttctaggcctttggaactctgtagt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaga