1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGAACGACGCTGCTCTGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaatttgtttcgctagccgaaccaatattttactttgttttgtttttgtaattccatattggtttctaaatgcggcttaattattttgtatctag
species | Arabidopsis thaliana |
transcript | AT3G05090.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATEST: gi|116407304|gb|EG449896.1|EG449896
genomic: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
EST: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATEST: gi|116449111|gb|EG491703.1|EG491703
genomic: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
EST: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATEST: gi|116407303|gb|EG449895.1|EG449895
genomic: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
EST: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATEST: gi|164177772|gb|EL997631.1|EL997631
genomic: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
EST: GTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATEST: gi|116407307|gb|EG449899.1|EG449899
genomic: GTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
EST: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAG ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
genomic: TGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaat ... ttgtatctagACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAACGACGCTGCTCTGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaatttgtttcgctagccgaaccaatattttactttgttttgtttttgtaattccatattggtttctaaatgcggcttaattattttgtatctag
- - - - - - - - - - - - AGAGCA