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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGCATTCTACAAGTATATAACTGTCATGCTCGCCTTAAATGGGCTCTCCCTATTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGgtaagccctttagataaaagccttacaatcaaaagagtaacatcgtctaagtcagattcttgcttctaacattaggaaatacaaattgaaaattcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G05010.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124887415|gb|EH966317.1|EH966317
EST:     CCCTATTTGCATGTGCTCTTACGGCAAACGGTAGCTCATTTTGGATTATG                         GTTGTATGGGATCACAAGTGTTTGTTACCA
genomic: CCCTATTTGCATGTGCTCTTACGGCAAACGGT-GCTCATTTTGGATTATGgtaagccctt ... attcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCA
EST: gi|125050175|gb|EL122444.1|EL122444
EST:     TCCCTATTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATG                         GTTGTATGGGATCACAA
genomic: TCCCTATTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGgtaagccctt ... attcttgcagGTTGTATGGGATCACAA