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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G04920.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 5'ss of exon 3
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgta-----tactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcag--------------------------------------
||||| |||| ||||||| | ||||||||| | || || || |||||| |||||||||| || ||||| ||||||||||| ||||||||  |||     ||         | | |||     || ||||    ||  || |  |||  || ||     | ||  |     || | |||                                      
AATGGTCTTGCCACTAAGGTAGAGAAGTCACGTAAGCAGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtaccaagtatcaacccagcattttgagcatttatgttaacaatattg-caatagtatttagg--tagcttcaacttcagtcttcagtgcgtgacctaacttcgtgttatctgctaattttgtag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 3
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaa--tgtttgcag---------------
||||| || | ||| ||| ||||||||||  | || || || ||||| ||||||||||| || ||||| ||||||||||| |||||||| | ||||||    |  || |    | |||  | || |      |       || ||   ||     | | |  ||  || ||||                 
AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtctatatacttacctgaccgccaagt-tctattattataagagttataaaccgcattgctaactacatgtaactaaactgcttgcttgtgtcgattttgcag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G029685_T01 (Zea mays), 5'ss of exon 3
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgta-gctttaagaatctgttttgatcaatgttt-gcag
|| || ||||  || ||| | ||||||||| | || || || |||||| | ||||||||||||||||||||||||||||| ||||||||  |||  |  ||      |  ||||| ||  | ||    |||||    |||   || ||  || | |  ||  |||| ||| ||||
AACGGCCTTGCTACCAAGGTAGAGAAGTCACGAAAGCAGATGAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGgtgagta--ccagtcaggaat--tgcta-ctcgtattccc-attgttctggtacatttcaattatgtttgctgcacaattttttgcag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G091383_T01 (Zea mays), 5'ss of exon 3
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttc--cctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgat-caatgtttgcag------------------------------------------------------------
|| || ||||  || ||| | ||||||||  | || || || ||||| |||||||||||||||||||| ||||| ||||| |||||||||||   ||| |  |||  |    || | | |    | ||     |    || |   |   || |   || || | |  || ||                                                                
AACGGTCTTGCTACCAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcacttgcattcatctgactgttgtgtctaatattactgcgcatttggaatgtggggatttcattgtgtttctgtggttctgataaaaaaatagttattttttgcgtgtaactgctaatttttttgttggattggttttgcag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G171426_T01 (Zea mays), 5'ss of exon 4
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgta---tgtatactggttttccctcttgctatcttctgtttttgattgt-gactgtagctttaagaatctgttttgatcaatgtttgcag-----------------------------------
||||| ||||  |||||| ||||||||||  | || ||||| |||||  ||||||||||||| ||||| ||||||||||| ||||||||    | | |||      |    ||   || || | | | |    ||  |  | |||  |  |    | || |  |  | || || ||                                    
AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAGGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagttatctacatacaatgatactccttacctgcagctctcttgtgcagtttatagtgtggacttaccgtgtc-actagtgcttacatatgctaatgtaatatacactttctgtcttttacag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G151252_T01 (Zea mays), 5'ss of exon 4
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgta---tgtatactggttttc---cctcttgctatcttc-tgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcag
||||| ||||  |||||| ||||||||||  | || ||||| || ||  ||||||||||||| ||||| ||||||||||| ||||||||    | | |||||   | |   |||||||  |  ||  | ||  | | |||| |      | ||| |   || |||   |    ||| |||
AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatctactgacatgcagtcctcttgtgaagtttatattacttactgtg-ccacgtgtgtaata-catgcttta--cgtcttttacag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G151252_T02 (Zea mays), 5'ss of exon 3
-------------AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgta---tgtatactggttttc---cctcttgctat-cttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcag
             ||||| ||||  |||||| ||||||||||  | || ||||| || ||  ||||||||||||| ||||| ||||||||||| ||||||||    | | |||||   | |   |||||||  |   || | ||  | | |||| |      | ||| |   || |||   |    ||| |||
TTTGTATTGCCAGAATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatctactgacatgcagtcctcttgtgaagtttatattacttactgtg-ccacgtgtgtaata-catgcttta--cgtcttttacag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G37190.2 (Glycine max), 5'ss of exon 4
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgta-tgtatactggttttccctcttgctatcttctgtttttg-attgtgactgtagctttaagaatctgttttgatca--atgtttgcag
||||||||||| |||||  | ||||| |||||||| ||||| ||||| || ||||| || || ||||| || ||||| |||||||||||| || |     || ||      |  | | | | | || |  | | |   | ||     || || || |  || |    || |||||||
AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaattctgtattgttgactattgtttacagcttatataattttcttataaaca-aataacctctggtgtttgttatttttgcag

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0151g00900.t01 (Vitis vinifera), 5'ss of exon 4
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttccct----cttgctatcttctgtttttg--attgtgactgtagctttaagaatctgttttgatcaatgtttgcag-------------------------------------------------------------------------------------
|||||| | || || ||| | || ||||||||||| ||||| |||||||||||||||||||| |||||  |||| || || |||||||||   | |     || |  |    |||| |    |    | | |  || ||  | |    || ||    || ||||| |  |   | |                                                                                        
AATGGATTGGATACCAAGGTGGAAAAGTCAAGGAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaatcatcttccttttaaccttgttggtgtgcactctagcaatagtaccaggcctttcaatttccttttttgctgtacactgggttactattgccattcccattagccatattatttgccttcaaagatttgggaccttcacgttcattgtactactcgttactcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045455|gb|DR341210.1|DR341210
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGAGAGATCCTGAAGAGATAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045413|gb|DR341168.1|DR341168
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045506|gb|DR341261.1|DR341261
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA
EST: gi|125064414|gb|EL132045.1|EL132045
EST:     GTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: GTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045480|gb|DR341235.1|DR341235
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAAGAGAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAA-GAGAGAA
EST: gi|86045433|gb|DR341188.1|DR341188
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045513|gb|DR341268.1|DR341268
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTCGA-GAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCT-GAAGAGAGAATCTT
EST: gi|86045453|gb|DR341208.1|DR341208
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|86045429|gb|DR341184.1|DR341184
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGAT
EST: gi|86045498|gb|DR341253.1|DR341253
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045412|gb|DR341167.1|DR341167
EST:     AATTAAGGAAAGGAAGAACAGGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGGATGCCAAGAAGAAGTGAGATCCTGAAGAG
genomic: AATTAAGGAAAGGAAGAACAGGG-CGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTG-ATGCCAAGAAGAAGTGAGATCCTGAAGAG
EST: gi|86045467|gb|DR341222.1|DR341222
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045497|gb|DR341252.1|DR341252
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045479|gb|DR341234.1|DR341234
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045410|gb|DR341165.1|DR341165
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|164020232|gb|ES075207.1|ES075207
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045516|gb|DR341271.1|DR341271
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045465|gb|DR341220.1|DR341220
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
EST: gi|86045435|gb|DR341190.1|DR341190
EST:     AAATTAAGGAAAGGAAGAACAGGRCGAAGAAAATCCGTGGTGTTTAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|164237589|gb|EL998658.1|EL998658
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045495|gb|DR341250.1|DR341250
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045512|gb|DR341267.1|DR341267
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAC-CTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045464|gb|DR341219.1|DR341219
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
EST: gi|86045434|gb|DR341189.1|DR341189
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|124937996|gb|EL014669.1|EL014669
EST:     GGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: GGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045458|gb|DR341213.1|DR341213
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045411|gb|DR341166.1|DR341166
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAAGAAGTGAGATCCTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA-GAAGTGAGATCCTGAAGAGAGAATCTT
EST: gi|86045443|gb|DR341198.1|DR341198
EST:     AATTAAGGAAAGGAAGAACAGGGCGAAGAAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATC-TGAAGAGAGAA
genomic: AATTAAGGAAAGGAAGAACAGGGCGAAGAAAA-TCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAA
EST: gi|86045407|gb|DR341162.1|DR341162
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTG
EST: gi|86045436|gb|DR341191.1|DR341191
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGC-AAGAAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAG
EST: gi|86045424|gb|DR341179.1|DR341179
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGGGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045471|gb|DR341226.1|DR341226
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045504|gb|DR341259.1|DR341259
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045509|gb|DR341264.1|DR341264
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045461|gb|DR341216.1|DR341216
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAA
EST: gi|86045476|gb|DR341231.1|DR341231
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045514|gb|DR341269.1|DR341269
EST:     AAATTAAGGAAAGGAAGAACAGGGCGA-GAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTG
EST: gi|86045456|gb|DR341211.1|DR341211
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|125024766|gb|EL097035.1|EL097035
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAA
EST: gi|86045451|gb|DR341206.1|DR341206
EST:     AAATTAAGGAAAGGAAGAACAGGGCGA-GAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGMAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|116413580|gb|EG456172.1|EG456172
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045490|gb|DR341245.1|DR341245
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAATGCTGGTGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGAT
EST: gi|86045482|gb|DR341237.1|DR341237
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAAGTGAGATCCTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAA-GTGAGATCCTGAAGAGAGAATCTT
EST: gi|86045477|gb|DR341232.1|DR341232
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045515|gb|DR341270.1|DR341270
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCGTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCC-TGAAGAGAGAATCTT
EST: gi|86045508|gb|DR341263.1|DR341263
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAAT
EST: gi|86045463|gb|DR341218.1|DR341218
EST:     AATTAAGGAAAGGAAGAAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGC-AAGAAGAAGTGAGATCCTGAAGAGA
genomic: AATTAAGGAAAGGAAGAA-CAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045447|gb|DR341202.1|DR341202
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATG
EST: gi|86045496|gb|DR341251.1|DR341251
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045492|gb|DR341247.1|DR341247
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|164039557|gb|EL989442.1|EL989442
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAA
EST: gi|86045426|gb|DR341181.1|DR341181
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAG
EST: gi|86045484|gb|DR341239.1|DR341239
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA
EST: gi|164043171|gb|ES140123.1|ES140123
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGA
EST: gi|86045422|gb|DR341177.1|DR341177
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAA-TCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|86045454|gb|DR341209.1|DR341209
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGAT
EST: gi|86045438|gb|DR341193.1|DR341193
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcag

- - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG