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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgtttttgtttctcaaagcttctgctcaaatttacttgatgattgaaactcatactcatgtatggttttttttgtggtgatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G04870.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 3
CAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgt------------ttttgtttctcaaagct----tctgctcaaatttacttgatgattgaaactcatactcatgtatggttttttttgtg-gtgatgtag---------------------------------------------
|||||| ||||||||||| || | | ||||||| || |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| |||||             ||  | ||| ||| ||    ||| ||    | |  ||      ||||||   ||||  || |   | ||||| |||     ||||                                              
CAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAGgtaagctgtttttacttcatctctaaaacctgttttcttcttccctcttttttggccatgaaacctgtactattg-actttatttttcgtgtacattgtatctgtccatttaataacttctacttcttcaatgcttggatgactag

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 3
CAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgt----ttttgtttctcaaagcttctgctcaaatt-tacttgatgattgaaactcatactcatgtatggttttttttgtggtgatgtag---------------------------------------------------------------
|||||| || |||||||| || | | ||||||| || |||||||||||||| ||||||||||| || |||||||||||||| ||||| ||| |||| |||||    | || || ||   ||     |     ||| | ||| ||   | || |   ||||| |      | | |||| |||  ||| |                                                                
CAAAGTTGGCTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctc--tctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataacttcttcaatacttggatgactag

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 3
CAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgtttttgtttctcaaagcttctgctcaaatttacttgatgattgaaactcatactcatgtatggtttt-ttttgtggtgatgtag-------------------------
 |||||||| |||||||| ||||||||||| || || |||||||||||| | || || ||||| || ||||||||||||||||| |||||||||||||||||           |||||   ||||    |||| | | |     | | |  |  | |||| |  || | || |||     || |                          
AAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTGGTTGCTACAACAATCTCTTTCGTTTGATGAAAAAGgtga---------aaagcacttgcttggttttagt-gctatgaaatattagttattatgtttctttgtattctgtacaagtgaaaattaactagaaagaaggaattttct

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S277_10V6.3 (Physcomitrella patens), 5'ss of exon 3
CAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgtttttgtttctcaaag-------cttctgctcaaatttacttg--atgattgaaactcatactcatgtatggttttttttgtggtgatgtag-------
 |||||||| || |||  |||||    ||| |||||||| || ||||| |||||||| || ||||| |||||||||||||| || ||  |  |    |||||  ||    ||||          ||   || |||| || |||   ||| |  ||     |  |    |   | | | | |  | ||| ||         
TAAAGTGGGGTCCTTTAAAGATAAGGATGGAAACCATATCGAGATGGGTTTACATGTCTTTTTCGGGTGCTACAACAATCTGTTTCGCCTCCTAGCTAAGgtactttcacctcatgcacgttctctctcgcgcaaagttgcttttcatgctctaataattttttttgctggcgatctctatccgatgaagttaggtgttt