1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTGgttagtattgtttaatccaaaactggtggtgtaaaattatactatgaatctttgctaatactaattttctatatattgcag
species | Arabidopsis thaliana |
transcript | AT3G04730.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATGCAAACGTATACGAATAATGTAAGGGATCAGAAGCAATCGGACTTG CTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTTEST: gi|116458903|gb|EG501495.1|EG501495
genomic: TCATGCAAACGTATACGAATAATG-AAGGGATCAGAAGCAATCGGACTTGgttagtattg ... tatattgcagCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTT
EST: TTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTG CTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTTCTCGACGACAEST: gi|47829393|gb|CK119077.1|CK119077
genomic: TTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTGgttagtattg ... tatattgcagCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTTCTCGACGACA
EST: TTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTG CTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTTCTCGACGACAEST: gi|125072574|gb|EL137215.1|EL137215
genomic: TTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTGgttagtattg ... tatattgcagCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTTCTCGACGACA
EST: AATGAAGGGATCAGAAGCAATCGGACTTG CTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTT
genomic: AATGAAGGGATCAGAAGCAATCGGACTTGgttagtattg ... tatattgcagCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTGgttagtattgtttaatccaaaactggtggtgtaaaattatactatgaatctttgctaatactaattttctatatattgcag
- - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA