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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGATATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGTTGGCGGgtaagtcgcattcgaatcttctatggaaataactagcaccgctcttgctttgtagaaaatattgcttgaagagctcttggtagtacatatagtctacatg...

Basic information

species Arabidopsis thaliana
transcript AT3G04600.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04600.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os12g35570.3 (Oryza sativa), 5'ss of exon 3
AAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGATATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGTTGGCGGgtaag-tcgcattcgaatcttctatggaaataactagcaccgct--cttgctttgtagaaaatatt--gcttg--aagagctcttggtagtacatatagtctacatg----------------------------
||| | |||| |||||| | |||||||| |||||||| |||||||||||||| |||||   || ||| ||||||||||| || ||  | |||||||| ||||||| |     |  | | |  | | ||  || ||  ||    |  ||   ||  |      | ||  |||    |||   |  | |   |  || || |||| |                              
AAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGgtaaggttcttcttaactgtagtcttgatttatctttcatttatgactaatttaatgactgttcttctgctaagcaagtaattcttgagatttatttattctatagaaaagtaatcctctgtcattttcttacag

upper sequence: AT3G04600.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S22_311V6.1 (Physcomitrella patens), 5'ss of exon 4
AAAGTCAAAGA--CTTGCCAGAGAAAATGCGAAAGATATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGTTGGCGGgta-------agtcgc--attcgaatcttctatggaaataactagcaccgctcttgctttgtagaaaatattgcttgaagagctcttggtagtacatatagtctacatg
  || ||| |   |||||| | || || || ||||| || || |||||||||||||| || |  | ||| |||||||||||||||||||| |||||||| |||||       || | |  ||||  | |||| |   ||  |    | || | |||  | |    || |||  ||  | ||      ||||  | | |  || | |   ||
--AGGCAAGGCGCCTTGCCCGTGAGAACGCTAAAGACATAATAGCTTGTGGATTCGACGTTAGTAGGACATTCATTTTCTCGGACTTCGAATATGTTGGAGGgtactttttcagacacttattctga-cttcaagaaaaggagaatgaacagttctgacct---ggagaattctgagttaaa-----ttggaggaaaacttactgtttttg