Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtatatttgactttttgacttgctgatttcattacttctcattgtttcatcatcttagtgattctctgtaatgtcatatatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G02830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G38650.2 (Glycine max), 5'ss of exon 4
CTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgt--atatttgac-tttttgacttgctgat--ttcattacttct----cattgtttcatcatc--ttagtgattctct-gtaatgtcatatatgcag---
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TTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattgaatatttacctcttgtttatagctaaatacagctgaggcagtagttttttgtcaatttgtggccatctagtttgattgcttgtttggttt
upper sequence: AT3G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G47660.1 (Glycine max), 5'ss of exon 4
CTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgt--atatttgac-tttttgacttgctgatttc--attac--------ttctcattgtttcatcatct-tagtgattctc-tgtaatgtcatatatgcag-
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-TGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCTCTCCGCCCAGttagtattgaatatttacctcttatttatatctaaatacagataaggcagtagttgtttgtcaatttgtggccattctagtttgattgcttgtttggttt
upper sequence: AT3G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
CTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtat-atttgactttttgacttgctgatttcattacttctcatt--gtttcatcatcttagtgattctctgtaatgtcatatatgcag------------
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TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttcccccagtttggattcaccaaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86037524|gb|DR333279.1|DR333279EST: GGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCG AATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTTTAAATTTGGT
genomic: GGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtatatttga ... atatatgcagAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAATTTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtatatttgactttttgacttgctgatttcattacttctcattgtttcatcatcttagtgattctctgtaatgtcatatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA