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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G02030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag
|||||||||||||||||||||||| | || || ||| |||| || |||||||||||   |||||||||||||||||||||  | ||| |  | ||||||||| || || |         ||    |     || ||   || |||   |    |||    |   |   | |   |  || |  |  ||| |||  |   |  |       
CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaacttttagtgacgtagataaaatttattttcctggattttattgttccagaca---attcaacaccattaacatgactgaaagtaa-gagcttaactttag------

upper sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag
||||||||||||||||| |||||| | || || ||| ||||||| |||||||| ||   |||||||||||||||||||||  | ||| |  | ||||||||| || || |    |    ||     | || ||  ||  ||| || |  |||  |   || |   |||   |   || |  |||   ||||   |   ||   |||    
CCCATATATCTTGTTGGGGAATCTTTAGGAGCATGCCTTGCACTGGCTGTTGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaacttttagtgatgaagat-----aagatttattctcttggattttattgttc--cagacaattcagcaccatta-acatgactgaaagtaaaagtttaactttag--

upper sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaac-attagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag
|||||||||||||||||||||||| | || || ||| ||||||| |||||||||||   || | ||||||||||||||||  ||||| |  | ||||||||| || || |    |    ||     | || ||| ||  |||  | |  |||  | |  |   | | |||       |    |||    |||||| | | |  |       
CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaacttttagtgatgtagat-----aagattttttctcttgggttttattgttccagaaaattcagcaccataaacatgactgaaagtaagagtttagctttag------

upper sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttc-----ttat-ttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag
|||||||| ||||||||||||||||| || |  ||| |||| || |||||||||||| |||||||||||||||||||||   | ||| |  |||||||||||||       | |||      |||| ||  |  ||  || |  |||   |   |||   || |  | | |      | | |  |||  | | |||                    
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgagaacttcctttttgtaaattatgttgatgagagcttatactttcacttgatttattcactgctataaatggtccttttcaattccagcaaaaattc----------------

upper sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag--
|||||||| || || |||||||||||||| |  ||| |||| || |||||||||||| |||| ||||| || |||||||   ||||| |  | ||||||||||| |  | |||| || |||      | |   |    ||  |  | | ||  | |||||     |      | ||| | |     |    | |  ||    | ||  |   
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtga-gaagctcctctcctat------gaatgat---gttgatgggagcttagagattagctgattttttatgcctataatc--ctttggaattcctggcaaacttaaaaca