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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCATgtaagtcaggtttcagatagatacattttcgtttgaatttttgataagctttttggatccaaacagtttcaaatatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G01690.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125289433|gb|EL303518.1|EL303518
EST:     AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT                         GGAACTTCGGATGAGGTAGT
genomic: AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCATgtaagtcagg ... atatgtgcagGGAACTTCGGATGAGGTAGT
EST: gi|125269399|gb|EL283484.1|EL283484
EST:     TATGTCGATTGCCCGGTTCTCATCATTTCAT                         GGAACTTCGGATGAGGTAGTGGATTGTTCTCATGGGAAACAACTATGGGA
genomic: TATGTCGATTGCCCGGTTCTCATCA-TTCATgtaagtcagg ... atatgtgcagGGAACTTCGGATGAGGTAGTGGATTGTTCTCATGGGAAACAACTATGGGA
EST: gi|124902131|gb|EH976211.1|EH976211
EST:     AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT                         GGAACTTCGGATGAGGTAGTGGATTGTCCTCATGGG
genomic: AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCATgtaagtcagg ... atatgtgcagGGAACTTCGGATGAGGTAGTGGATTGTTCTCATGGG