1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattggttaatagtaaactgaaatgacttaggaacccctcaaacctgataattgttctaccaataagcggaatctataaccttataattgttctac...
species | Arabidopsis thaliana |
transcript | AT3G01540.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCTAATG-CCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCCGCGGGAG GTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTEST: gi|125320386|gb|EL334471.1|EL334471
genomic: CTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattgg ... gttttcttagGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGT
EST: CTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG GTACTACAGTGCAGGTTTCTCTGCTCCAACTEST: gi|124984002|gb|EL056695.1|EL056695
genomic: CTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattgg ... gttttcttagGTACT-CAGTGCAGGTTTCTCTGCTCCAACT
EST: TGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG GTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAAEST: gi|116438332|gb|EG480924.1|EG480924
genomic: TGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattgg ... gttttcttagGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAA
EST: CTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG GTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGGEST: gi|164231619|gb|EL995166.1|EL995166
genomic: CTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattgg ... gttttcttagGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGG
EST: GGTTTTCCACCTGAGCTTCTGCGGGAG GTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGG
genomic: GGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattgg ... gttttcttagGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGgtatgattggttaatagtaaactgaaatgacttaggaacccctcaaacctgataattgttctaccaataagcggaatctataaccttataattgttctac
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT