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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag

Basic information

species Arabidopsis thaliana
transcript AT2G47850.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G086994_T03 (Zea mays), 5'ss of exon 5
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag
                                                        ||||  |   | | |  | |||||   ||       |  |  | | ||| |||| ||| ||  |||| || |  |    |  ||  || ||||  || | ||     ||| | | | |     ||| | |    | | |  |      | | | ||  | |    ||   |||  ||  |||||     ||    ||
------------------------------------------------------GGTGAGAAAGAATGCTCCTACTATATGAAGAC------TGGGCAATGCAAG-TTTGGTTCTAC--ATGTAAATTTCA----TCATCCAGAATTTG-GTGGTATTCCGgtaacccctggcat----atatccagcattacaatcagc----atctgtgccctcccccctta-catatgcttcaaattggcaaatgggaag

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G17250.1 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgt--ttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | ||||| | |||||||||||| |||||||||||  ||||   |||| |  |  |  ||   ||| | |        | | ||    |        |||   ||   |||||  |   |   ||   |||                                                                     
CTGTAAATTTGGTGCATCTTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCTGgtatgactcttcgttttgctcttctgctcatccatgttacctacagaaaataatgcaattggttaaaccatgccttttgtttaaacag-------------------------------------------------------------------

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G17260.2 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | ||||| | |||||||||| | || ||||||||  ||||   |||| | |   |  |   || |||         |       ||    | |  | ||       |||    |  |    || |||   ||||   |  | ||| || |                                               
CTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGgtatgata-atgacacttcttgtt--------gctcttcttctgcctcgtgtaattgacagcaaa----tgatgcaatgttaaaacatgccttt--tgtttaaacag----------------------------------------------

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G02550.1 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgt--aagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | | ||| | |||| ||||||| |||||||||||  ||||   |||   |   || |||   ||| |             ||  ||    |||    | | ||     |||   |   |    |||| |  |     |||  | ||| || |                                               
CTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAACCCAAGCTCCATTAAATATTTATGGATACCCGTTACGGCCGgtttgactcttctttttgctctt-------------ctgctc----gttcatgttacctacaccaaa---taaatgtaatgatta-aaccatgccttttgtttaaacag----------------------------------------------

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0104g01460.t01 (Vitis vinifera), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctact-atttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag
 ||||||||||| ||||| ||||  || ||||||||||  ||||  ||||||||||||||||| ||  |||||||||| || ||||||||  || ||  |||  |  ||   |  | || |  |   |   |  | | |     ||||   | |      ||       |||||   ||  || | |  || | | | |  | |       | | || |||||| | |  |                       
CTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGgttgggatttggtttattcttcaccttttctaatcaaattc---gttttactaaatcagcatgg-----ttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacag----------------------