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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G47850.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G17250.1 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaag---ctttgtttc-cactcatgtcaaataaaaggctagtctcgagtttgcatgatctttta---taaactctttgtag------
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | ||||| | |||||||||||| |||||||||||  ||||   |||| |   ||| ||||  | ||  ||   |   |         |   |  |      ||   |||    |  |  |||||        
CTGTAAATTTGGTGCATCTTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCTGgtatgactcttcgttttgctcttctgctcatccatgttacctacagaaaataatgcaattggttaaaccatgccttttgtttaaacag

upper sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G17260.2 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagct--------ttgtttccactcatgtcaaataaaaggctagtctcg--agtttgcatgatctttta-taaactctttgtag------
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | ||||| | |||||||||| | || ||||||||  ||||   |||| | |        || ||    ||| | |          |  | |  |   |  |      || ||  |  |  |  |||||        
CTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGgtatgataatgacacttcttgttgctcttcttctgcctcgtgtaattgacagcaaatgatgcaatgttaaaacatgccttttgtttaaacag

upper sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G02550.1 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgt--aagctttgtttccactcat---gtcaaataaaaggctagtctcgagtttgcatgatctttta--taaactctttgtag------
 ||||||||||| || || || ||||||||||||||||| |||| ||||||||   | | ||| | |||| ||||||| |||||||||||  ||||   |||   |   || |||   ||| |    ||    |     |      | | |     | ||  || |   |  |  |||||        
CTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAACCCAAGCTCCATTAAATATTTATGGATACCCGTTACGGCCGgtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaacag

upper sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G02540.1 (Glycine max), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagct--------ttgtttccactcatgtcaaataaaaggctagtctcg--agtttgcatgatcttttataa-actctttgtag------
 ||||||||||| || || || |||||||||||||| || |||| ||||| ||   | ||||| | |||||||||| | |||||||||||  ||||   |||| | |        || |||   ||| | |          |  | |  |   |  ||    ||| ||     |  |  |||||        
CTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGAATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTACGGTCGgtatgataatggcacttctttttgctcttcttctccctcgcgtaattgacagcaaattatgcgatgttaagccatgccttttgtttaaacag

upper sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0104g01460.t01 (Vitis vinifera), 5'ss of exon 4
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGA------GAGgtaagctttgtttccactcatgtcaaataaaaggc-tagtctcgagtttgcatgatctt--tt-----ataaactctt---tgtag--------------------------------
 ||||||||||| ||||| ||||  || ||||||||||  ||||  ||||||||||||||||| ||  |||||||||| || ||||||||  || ||      | | |  | ||| ||      | | || ||| |||  | |  |    | |  ||||| |  |  ||     ||  || |||   | |||                                
CTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGgttgggatttggtttattcttcaccttttctaatcaaattcgttttactaaatcagcatggttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164221125|gb|EL992896.1|EL992896
EST:     GATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAG                         GGTGATAACGAAT
genomic: GATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttg ... ctctttgtagGGTGATAACGAAT