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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgtcagtaataaaattgaattttcttttaatgaaacagttgattctttagttatatagttttgaatctcatgaaaatgttttgatgttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G46710.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os04g48790.1 (Oryza sativa), 5'ss of exon 4
TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgt--cagtaataaaattgaattttctt-ttaatgaaaca-gttgattctttagttatatagttttgaatctcatgaaaatgttttgatgttgtag
|||||| |||  ||| ||||| ||||| |||||||||||| | |  ||||| ||||||||| | ||  | |||||||||||||| ||||| |||||||| ||   || || ||   || ||| | |  |||   || ||     || |  ||    |  | | ||   | ||  |                    
TTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGgtattagaaacaactctggattctttcgttagaaaagcatacacatacactaacc-tgcaatgtttgttttccag--------------------

upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G44820.1 (Glycine max), 5'ss of exon 4
TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgtcag------taataa--aattgaattttcttttaatgaaaca-gttgattctttagttatatagttt--tgaatctcatgaaaatgttttgatgttgtag
 ||||| |||  | | ||||| ||||| || |||| ||||||||| ||||||||||||||||||||||| || ||||| ||||| || || ||||| || || ||      | ||||  ||  |  | ||||| |  ||   |  |||| ||  |   | | | |||||  | |  ||||| |    |||  | |    || 
CTGGGCAATCAATTTGATGGCAGATGTTGTTGAGCGTGAACAGTTCAACAAAATGAATGCTCGCAATGTTGCCATGGTTTTTGCGCCCAACATGACACAGgttagccaacattataagcaaaggtgtattcttctgttgtttcgtgttggtttctc--tcaaacagtttaatcaggctcattatttagttgagcttccttat

upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 4
TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgtcagtaataaaattgaattttcttttaatgaaacagttgattctttagttatatagttttgaatctcatgaaaatgttttgatgttgtag------------------
 ||||| |||  | | ||||| || || || || ||||||||||| ||||||||||||||||||||| | || ||||| ||||| || || ||||| || || ||  |         ||| |     ||| ||   ||  ||||||  ||| | || | |||  |    | |||  ||||   |    |                    
CTGGGCAATCAATTTGATGGCAGACGTTGTTGAACATGAACAGTTCAACAAAATGAATGCTCGCAATATTGCCATGGTTTTTGCGCCCAACATGACACAGgttagcca-------acattataagcaaataaagatgt--attcttctgttgtttattgttggtttctctcaaacagtttaattaggctcattatttagttgaacttcc

upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgtcagtaataaaattgaattttctttta-atga-aacagttgattctttagttatatagttttgaatctcatgaaaatgttttgatgttgtag--------------------------------------
 |||||  ||  | | ||||| ||||| ||  |  | |||    | ||||| ||||| ||||||||| | || |||||||||||||| ||||||||||| || ||| ||    | ||  |  |  ||  |||    || |||| |      |   ||  ||||    ||| | |     |||||      ||                                       
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatct--tcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag