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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAACATTAGgtacaatcacttttgtttatttccatatcaaagtaacattgtgttagtaacttaccctttatgataacgttcttttgaattttag

Basic information

species Arabidopsis thaliana
transcript AT2G46420.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 4
AATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAACATTAGgta--------caatcacttttgtttatttccatatca-----------aagtaacattgtgttagtaacttaccctttatgataacgttcttttgaattttag
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AATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGgtaggcattggcaggcctttccataaagtccaaaatcattaacatccacatattttatcatcttaattggttaactattatgtccat-ttcttttaaatct---