1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGgtaaactcatatcactgtccttcatgtgtcgtagcagcagttgctttagtggttttattgatgttgaagtgtatgcaagtatatatgtatatagatagtttctgatagcgtaaattgatgatgcag
species | Arabidopsis thaliana |
transcript | AT2G45790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACGATAAACTCAAG GAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTEST: gi|164148209|gb|EL967408.1|EL967408
genomic: AGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
EST: AGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAG GAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTEST: gi|152034089|gb|BP867302.2|BP867302
genomic: AGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
EST: AGCCCTGAAGCCTGCACCTTGGAGACGATAAACTCAAG GAGTTGATAAATTTCACGC
genomic: AGCC-TGAAGC-TGCACCTTGGAGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGgtaaactcatatcactgtccttcatgtgtcgtagcagcagttgctttagtggttttattgatgttgaagtgtatgcaagtatatatgtatatagatagtttctgatagcgtaaattgatgatgcag
- CTGAAG
- - TGAAGC
- - - AAGCTG
- - - AGCTGC
- - - - - - - - TTGGAG
- - - - - - - - TGGAGA