1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTAAAGAAGTTTCTGTAGCAGCTAGGAGAAGGAATGCTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATgtgagagaggtaagattacgttctcttcacaatcttgatcagataagttgtcaccgtagccacgcatgatcattgatgcattctagagtttctgtgtttt...
species | Arabidopsis thaliana |
transcript | AT2G45640.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAAT GTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATEST: gi|86075848|gb|DR371605.1|DR371605
genomic: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATgtgagagagg ... attgataaagGT--------T-GGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGAT
EST: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAAT GTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATEST: gi|152033713|gb|BP562681.3|BP562681
genomic: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATgtgagagagg ... attgataaagGT--------T-GGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGAT
EST: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAAT GTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGAT
genomic: CTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATgtgagagagg ... attgataaagGT--------T-GGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAAGAAGTTTCTGTAGCAGCTAGGAGAAGGAATGCTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATgtgagagaggtaagattacgttctcttcacaatcttgatcagataagttgtcaccgtagccacgcatgatcattgatgcattctagagtttctgtgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaggtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgttctct