Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGACGAGCCAGAGCTACTATCGATAGAAAAATACTTTCCCTAGAAGCGTTTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatgaaatcaacatcaactatttgacccatatatcatattctgattataaggagatatataacag

Basic information

species Arabidopsis thaliana
transcript AT2G43255.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116395280|gb|EG437872.1|EG437872
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395284|gb|EG437876.1|EG437876
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395276|gb|EG437868.1|EG437868
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAA-TTTTTTGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395160|gb|EG437752.1|EG437752
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395164|gb|EG437756.1|EG437756
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395162|gb|EG437754.1|EG437754
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395278|gb|EG437870.1|EG437870
EST:     TTTTTTGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395158|gb|EG437750.1|EG437750
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395154|gb|EG437746.1|EG437746
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395163|gb|EG437755.1|EG437755
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395155|gb|EG437747.1|EG437747
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395287|gb|EG437879.1|EG437879
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395156|gb|EG437748.1|EG437748
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTT-GGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395099|gb|EG437691.1|EG437691
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395285|gb|EG437877.1|EG437877
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: gi|116395283|gb|EG437875.1|EG437875
EST:     TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG                         GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGACGAGCCAGAGCTACTATCGATAGAAAAATACTTTCCCTAGAAGCGTTTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatgaaatcaacatcaactatttgacccatatatcatattctgattataaggagatatataacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA