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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGgtaaagtccaaaactttgtaccctcctcaggccattaaggttattattatcttctcagatgatgtccttacaaagaaatcattgatgttgtttttgttattgttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G42960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 4
TTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGgtaaagtccaaaactttgtaccctcctcaggccattaaggttattattatcttctcagatgatgtccttacaaagaaatcattgatgttgtttttgttattgttttcag-
 ||||  |||||| ||||||||  | ||||||||||| || ||||| || ||||| || || || |||||||| ||||| ||||| ||||| || ||||||||  |  ||    |  ||| |  | | |   | |||  | | |||||        | | |||  | | |  |  || | |||  | |||    ||||     |||||| 
-TGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGGtat-gcacatgtttcagtatctacttgactactttatagattttatt-------taaaggattgcataaatagaaacttattcctattggacctgttcccaatttcagt

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 4
TTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGgtaaagtccaaaactttgtaccctcctcaggccattaaggttattattatcttctcagatgatgtccttacaaagaaatcattgatgttgtttttgttattgttttcag
|||||  ||| || ||||||||  | ||||||||||| || ||||| || ||||| || || || |||||||| ||||| ||||| ||||| || ||||||||   | || ||  ||  |   ||      | ||  || || |||||        | | |||  | |||  |  || | | | ||||||    ||||     ||||||
TTGATACTGATTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGgta---tgcagaatgtttcagtatct----actatatagatt-ttatt-------taaaggattgcattaatagaaacttactcatgttggacctgttcccaatttcag

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
TTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGgtaaagtccaaaactttgt----accctcctcaggccattaaggttattattatcttctcagatgatgtccttacaaagaaatcattga-tgttgtttttgttattgttttcag
||||||||||||| ||||||||  | ||||| ||||| || ||||||||||||| ||| ||||| || ||||| || || ||||| ||||| || ||||||||  ||  | |  ||  |    |  | |||   | | |||  ||| ||       | | | || |  |  |||  |     |||     ||   | |||  | | | ||||||
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtat-gtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag