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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcag

Basic information

species Arabidopsis thaliana
transcript AT2G39190.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39190.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G35610.1 (Glycine max), 5'ss of exon 4
TTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcag
||||||| || |||||||| |||||||||||||||||   ||| || |||||||| |||| |||   |  |||    ||| |   || | ||  |  | ||   | |||||||  ||         ||   | ||     ||   |||   ||   |||||| ||   ||                                            
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaa--actgtctttattgcc---atttatttaccgtcaaacatttctttctcttg---------atgaattttgaaagatagggcaaatta---ttggttattggcag--------------------------------------------

upper sequence: AT2G39190.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G31940.1 (Glycine max), 5'ss of exon 4
TTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcag
||||||| || |||||||| |||||||||||||||||   ||| || |||||||| |||| |||   |  |||    ||| |   || | ||  || | ||   | ||||||   ||         ||   | |      ||   |||   ||   |||||| ||   ||                                            
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaa--actgtctttattgcc---atttatttactgtcaagcatttctttcccatg---------atgaatttgggaagatggggcaaatta---ttggttattggcag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060102|gb|DR355859.1|DR355859
EST:     GTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAG                         GCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
genomic: GTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagataga ... gaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
EST: gi|124820499|gb|EH905365.1|EH905365
EST:     TCATTGGGACTGAAATCTCCAAG                         GCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
genomic: TCATTGGGACTGAAATCTCCAAGgtcagataga ... gaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT