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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAGgtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataaaggtttaactttttggttcggaatccacttcattgttgcatacag

Basic information

species Arabidopsis thaliana
transcript AT2G38840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g08400.1 (Oryza sativa), 5'ss of exon 4
GTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAGgtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataaaggtttaactttttggttcgga-atccacttcattgttgcatacag
||||||| |||||||| ||||| |||||||||||||||||| | |   |        ||  ||  |   || ||    ||  ||   |  || ||    |   |    | ||||  | || | |  | ||  |                  
GTTTTGGAGTTGGACATATGCGAGATACCAAAACAAAAGgtttggtggtgccaat--gacaactttgtaatgttatc-ctaaatgattccatatcctaattgaaggattctaacactctgctccacatattgaag----------------

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G030138_T01 (Zea mays), 5'ss of exon 4
GTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAGgtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataa-aggtttaactttttggttcggaatccacttcattgttgcatacag
||||||| |||||||||||||| ||||| |||||||||||||  |             | | |  |    | |   |     |||| | |||     | ||   | |   | | |       | | |                        
GTTTTGGAGTTGGACACATGCGGGATACAAAAACAAAAGgtaaggttggctcacaactatgccgatgtagtttactattgtaatatctttatcgacggatatcgacaaactgatccacactatacag------------------------

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 3
GTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAGgtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataaaggtttaactttttggttcggaatccacttcattgttgcatacag
| ||||||||||| ||||||||||| ||||| |||||||||| |           ||||    | |||||||||||   || ||||   || ||  |  |||||    ||| |   | |  ||   ||||   ||  ||      | |||
GGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGgtaga-----------tagaa---attaccatctttctcgtggatatgcttaattggatataata----ttttatagtatattttttaatct-tttggttcacatcttcag